Publications CRS4 - Equipe SCA



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Publications en 2022
Various talks, works and publications
[6-GBS22]
The WorkflowHub: A FAIR Registry for Workflows
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - ELIXIR All Hands 2022 - june 2022
[6-HMB22]
Privacy Risks of Whole-Slide Image Sharing in Digital Pathology
Petr Holub, Heimo Müeller, Tomáš Bíl, Luca Pireddu, Markus Plass, Fabian Prasser, Irene Schlünder, Kurt Zatloukal, Rudolf Nenutil, Tomáš Brázdil
preprint - medrxiv - april 2022
Contractual reports
[7-BRE22]
IsolaS2 web-app Rapid assessment of the utility of the Sentinel-2 MSI land-use data for regional actors [Download PDF version]
Gavin Brelstaff
CRS4 Loc. Piscina Manna, Edificio 1 09050 Pula (CA) Research Note - october 2022
 
Publications en 2021
Peer-reviewed publications in International Journals
[2-JBC21]
ISA API: An open platform for interoperable life science experimental metadata
David Johnson, Dominique Batista, Kevin Cochrane, Robert P Davey, Anthony Etuk, Alejandra N. Gonzalez-Beltran, Kenneth Haug, Massimiliano Izzo, Martin Larralde, Thomas N Lawson, Alice Minotto, Pablo Moreno, Venkata Chandrasekhar Nainala, Claire O Donovan, Luca Pireddu, Pierrick Roger, Felix Shaw, Christoph Steinbeck, Ralf Weber, Susanna-Assunta Sansone, Philippe Rocca-Serra
GigaScience Oxford University Press vol. 10 num. 9 - september 2021  doi: 10.1093/gigascience/giab060
Peer-reviewed publications in international events
[4-WHM21]
ISO 23494: Biotechnology -- Provenance Information Model for Biological Specimen And Data
Rudolf Wittner, Petr Holub, Heimo Müeller, Carole Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio, David Grunwald​, Hiroki Nakae
Provenance and Annotation of Data and Processes Springer International Publishing pages 222--225 Cham - 2021
isbn: 978-3-030-80960-7  doi: 10.1007/978-3-030-80960-7_16
[4-VB21]
Scaling deep learning data management with Cassandra DB [Download PDF version]
Francesco Versaci, Giovanni Busonera
2021 IEEE International Conference on Big Data (Big Data) IEEE International Conference on Big Data (Big Data) - december 2021
isbn: 978-1-6654-3902-2  doi: 10.1109/BigData52589.2021.9672005
[4-CCB21]
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications
Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon A. Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moreto, Costantino Grana
25th International Conference on Pattern Recognition IEEE - january 2021
[4-VER21]
WaveTF: a fast 2D wavelet transform for machine learning in Keras [Download PDF version]
Francesco Versaci
Pattern Recognition. ICPR International Workshops and Challenges. CADL@ICPR 2021 Springer Lecture Notes in Computer Science pages 605-618 vol. 12661 - january 2021
isbn: 978-3-030-68763-2  doi: 10.1007/978-3-030-68763-2_46
Various talks, works and publications
[6-SSC21]
Packaging research artefacts with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, Jose Maria Fernandez, Daniel Garijo, Bjorn Gruning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble
Article - arXiv - august 2021
[6-GBS21]
The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - BOSC 2021 - july 2021
[6-LEO21]
Sustainability and Reuse: LifeMonitor
Simone Leo
Invited talk - Workflow Life Cycle Workshop, ELIXIR All Hands 2021 - june 2021
Contractual reports
[7-BRE21]
Fostering inclusive regional access to Sentinel-2 data [Download PDF version]
Gavin Brelstaff
CRS4 Loc. Piscina Manna, Edificio 1 09050 Pula (CA) Research Note - 2021
 
Publications en 2020
Peer-reviewed publications in International Journals
[2-GMA20]
Community standards for open cell migration data
Alejandra N. Gonzalez-Beltran, Paola Masuzzo, Cristophe Ampe, Gert-Jan Bakker, Sébastien Besson, Robert H. Eibl, Peter Friedl, Matthias Gunzer, Mark Kittisopikul, Sylvia E. Le Dévédec, Simone Leo, Josh Moore, Yael Paran, Jaime Prilusky, Philippe Rocca-Serra, Philippe Roudot, Marc Schuster, Gwendolien Sergeant, Staffan Strömblad, Jason R. Swedlow, Merijn van Erp, Marleen van Troys, Assaf Zaritsky, Susanna-Assunta Sansone, Lennart Martens
GigaScience Oxford University Press vol. 9 num. 5 - may 2020
issn: 2047-217X  doi: 10.1093/gigascience/giaa041
Peer-reviewed publications in international events
[4-MFU20]
The openEHR Genomics Project
Cecilia Mascia, Francesca Frexia, Paolo Uva, Gianluigi Zanetti, Luca Pireddu, Gideon Giacomelli, Christina Jaeger-Schmidt, Aurelie Tomczak, Simon Schumacher, Florian Kraecher, Roland Eils, Silje Ljosland Bakke, Heather Leslie
Digital Personalized Health and Medicine - Proceedings of MIE 2020 IOS Press Studies in Health Technology and Informatics pages 443 - 447 vol. Volume 270 European Federation for Medical Informatics (EFMI) - 2020  doi: 10.3233/SHTI200199
[4-BB20]
Mutual causation between body and brain [Download PDF version] [Download PDF version]
Gavin Brelstaff, Alexandra Brelstaff
ESI SyNC 2020 Poster abstracts Ernst Strüngmann Institute Systems Neuroscience ESI SyNC pages 4 Wolf Singer, Pascal Fries Ernst Strüngmann Institute Systems Neuroscience Ernst Strüngmann Institut gGmbH Deutschordenstraße 46 60528 Frankfurt am Main Germany - 2020
[4-BB20]
Affective HRI: a potential impedance mismatch [Download PDF version]
Gavin Brelstaff, Alexandra Brelstaff
cAESAR 2020 Workshop on Adapted intEraction with SociAl Robots Proceedings University of Torino, Italy cAESAR pages 1-2 Berardina De Carolis , Cristina Gena , Antonio Lieto ACM IUI University of Torino, Italy - 2020
[4-CB20]
On the breakup patterns of urban networks under load
Marco Cogoni, Giovanni Busonera
Complex Networks & Their Applications IX COMPLEX NETWORKS 2020 Springer - december 2020
Various talks, works and publications
[6-GBS20]
The WorkflowHub: A FAIR registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Flora DAnna, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Ivan Topolsky, Alban Gaignard, Bjoern Gruening, Simone Leo, Luca Pireddu, Phil Ewels, Maciek Bak, Salvador Capella-Gutierrez, Michael R Crusoe, Frederik Coppens
Poster - International FAIR Convergence Symposium 2020 - november 2020
[6-LC20]
Testing workflows: Life Monitor and OpenEBench
Simone Leo, Salvador Capella-Gutierrez
Invited talk - ELIXIR Workshop on FAIR Computational Workflows, ECCB 2020 - september 2020
[6-WHG20]
ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen and Data
Rudolf Wittner, Petr Holub, Jörg Geiger, Carole Goble, Heimo Müeller, Stian Soiland-Reyes, Elliot Fairweather, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Gianluigi Zanetti, Caterina Strambio, Josh Moore, David Grunwald​, Jason R. Swedlow
Poster - ProvenanceWeek 2020 - june 2020

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