Publications CRS4 - Equipe SCA



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Publications en 2011
Peer-reviewed publications in International Journals
[2-MSC11]
Assessing the impact of lentiviral vector integration on splicing of cellular genes at the genome-wide level
Eugenio Montini, Jacopo Sgualdino, Daniela Cesana, Fabrizio Benedicenti, Stefania Merella, Simone Leo, Gianluigi Zanetti, Luigi Naldini
Retrovirology BioMed Central Ltd pages 1--2 vol. 8 num. Suppl 2 - october 2011  doi: 10.1186/1742-4690-8-S2-O15
[2-BBC11]
Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection
Alessandra Biffi, Cynthia C. Bartolomae, Daniela Cesana, Natalie Cartier, Patrick Aubourg, Marco Ranzani, Martina Cesani, Fabrizio Benedicenti, Tiziana Plati, Enrico Rubagotti, Stefania Merella, Alessia Capotondo, Jacopo Sgualdino, Gianluigi Zanetti, Christof von Kalle, Manfred Schmidt, Luigi Naldini, Eugenio Montini
Blood American Society of Hematology pages 5332--5339 vol. 117 num. 20 - may 2011  doi: 10.1182/blood-2010-09-306761
Peer-reviewed publications in international events
[4-PLZ11]
MapReducing a genomic sequencing workflow [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
Proceedings of the second international workshop on MapReduce and its applications ACM pages 67--74 - 2011  doi: 10.1145/1996092.1996106
[4-TSF11]
Open Source Integration Engines for Safer Hospitals. A Case Study. [Download PDF version]
Riccardo Triunfo, Alessandro Sulis, Francesca Frexia
World of Health IT Conference 2011 HIMSS Rue de la Loi 67 B-1040 Brussels - 2011
[4-PLZ11]
The Seal suite of distributed software for high-throughput sequencing [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
SEQAHEAD MC Business Meeting and Scientific Meeting pages 23 vol. 17 SEQAHEAD COST action BM1006 Brussels - november 2011  doi: 10.14806/ej.17.B.267
[4-LAG11]
DISCOVERY, Beyond the Clouds - DIStributed and COoperative framework to manage Virtual EnviRonments autonomicallY: a prospective study
Adrien Lebre, Paolo Anedda, Massimo Gaggero, Flavien Quesnel
Virtualization for High Performance Cloud Computing workshop (colocated with EUROPAR 2011) - august 2011
Various talks, works and publications
[6-PIR11]
Il calcolo su larga scala: dall'analisi dei dati genetici all'analisi del web [Download PDF version]
Luca Pireddu
presentation - Notte dei Ricercatori, 2011 - october 2011
[6-LCL11]
Scalable Data Management and Computable Framework for Large Scale Longitudinal Studies.
Luca Lianas, Gianmauro Cuccuru, Simone Leo, Ilenia Zara, Maristella Pitzalis, Magdalena Zoledziewska, Francesca Deidda, Serena Sanna, Gianluigi Zanetti
poster - 12th International Congress of Human Genetics (ICHG) - october 2011
[6-PLR11]
Scaling with the flow: advantages of a MapReduce-based scalable and high-throughput sequencing workflow [Download PDF version] [Download PDF version]
Luca Pireddu, Simone Leo, Frederic Reinier, Riccardo Berutti, Rossano Atzeni, Gianluigi Zanetti
poster - International Conference on Human Genetics (ICHG) 2012, Montreal, Canada - october 2011
[6-LZV11]
Efficient computing of genotype calling for GWAS
Simone Leo, Ilenia Zara, Maria Valentini, Serena Sanna, Gianluigi Zanetti
poster - 12th International Congress of Human Genetics (ICHG) - october 2011
[6-PLZ11]
A Distributed and High-Throughput Short Read Processing Suite [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
poster - HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms - july 2011
[6-LEO11]
Python MapReduce Programming with Pydoop
Simone Leo
talk - EuroPython 2011 - june 2011
 
Publications en 2010
Peer-reviewed publications in International Journals
[2-MCS10]
A Comparison of Y-Chromosome Variation in Sardinia and Anatolia Is More Consistent with Cultural Rather than Demic Diffusion of Agriculture
Laura Morelli, Daniela Contu, Federico Andrea Santoni, Michael Whalen, Paolo Francalacci, Francesco Cucca
PLoS ONE pages e10419 vol. 5 num. 4 - 2010  doi: 10.1371/journal.pone.0010419
[2-BFP10]
Exploiting Dynamic Partial Reconfiguration of FPGAs for Software Debugging
Giovanni Busonera, Alessandro Forin, Richard Neil Pittman
Transactions on High-Performance Embedded Architectures and Compilers (Transactions on HiPEAC) Springer vol. Volume 5, Issue 2 - 2010
[2-SHL10]
Deciphering the code for retroviral integration target site selection
Federico Andrea Santoni, Oliver Hartley, Jeremy Luban
PLoS Comput Biol pages e1001008 vol. 6 num. 11 - november 2010
[2-ALM10]
Suspending, migrating and resuming hpc virtual clusters
Paolo Anedda, Simone Leo, Simone Manca, Massimo Gaggero, Gianluigi Zanetti
Future Generation Computer Systems pages 1063--1072 vol. 26 num. 8 - october 2010
[2-TTS10]
Cots technologies for telemedicine applications
Riccardo Triunfo, Roberto Tumbarello, Alessandro Sulis, Gianluigi Zanetti, Luca Lianas, Vittorio Meloni, Francesca Frexia
International Journal of Computer Assisted Radiology and Surgery pages 11--18 vol. 5 num. 1 - january 2010
Peer-reviewed publications in international events
[4-LZ10]
Pydoop: a python mapreduce and hdfs api for hadoop
Simone Leo, Gianluigi Zanetti
Proceedings Of The 19th ACM International Symposium On High Performance Distributed Computing ACM HPDC 2010 pages 819--825 - 2010
[4-LAG10]
Using virtual clusters to decouple computation and data management in high throughput analysis applications
Simone Leo, Paolo Anedda, Massimo Gaggero, Gianluigi Zanetti
Proceedings Of The 18th Euromicro Conference On Parallel, Distributed And Network-Based Processing IEEE Computer Society pages 411--415 M. Danelutto et al. Los Alamitos, CA, USA - 2010
[4-AZ10]
VHPC 2010: fifth workshop on virtualization in high-performance cloud computing
Michael Alexander, Gianluigi Zanetti
Euro-Par Parallel Processing Workshops Springer - 2010

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