Publications de Capobianco au CRS4

Peer-reviewed publications in International Journals

[2-OTC13]

Warehousing re-annotated cancer genes for biomarker meta-analysis Massimiliano Orsini, Antonella Travaglione, Enrico Capobianco Computer Methods and Programs in Biomedicine pages 166 – 180 vol. 111 num. 1 - july 2013  doi: 10.1016/j.cmpb.2013.03.010

Peer-reviewed publications in International Journals

[2-OC12]

MiRWare: A MiRNA-mRNA warehouse for inference on cancer regulation Massimiliano Orsini, Enrico Capobianco MicroRNA - 2012

Peer-reviewed publications in International Journals

[2-MTC11]

Manifold learning in protein interactomes Elisabetta Marras, Antonella Travaglione, Enrico Capobianco Journal of Computational Biology pages 81-96 vol. 18 num. 1 - 2011  doi: 10.1089/cmb.2009.0258

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[2-TMC11]

Dynamic modularization assessment in affine protein interaction networks. Antonella Travaglione, Elisabetta Marras, Enrico Capobianco Biostatistics, Bioinformatics and Biomathematics - 2011

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[2-CMT11]

Multiscale Characterization of Signaling Network Dynamics through Features. Enrico Capobianco, Elisabetta Marras, Antonella Travaglione Statistical Applications in Genetics and Molecular Biology vol. 10 num. 1 - 2011  doi: 10.2202/1544-6115.1657

Peer-reviewed publications in International Journals

[2-OC10]

Coupling genomic expression with copy number variation in brain cancer regulation studies Massimiliano Orsini, Enrico Capobianco Biostatistics, Bioinformatics, and Biomathematics (BIOSIM) pages 55 vol. 1 num. 1 - 2010

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[2-MTC10]

Sub-modular resolution analysis by network mixture models Elisabetta Marras, Antonella Travaglione, Enrico Capobianco Statistical Applications in Genetics and Molecular Biology vol. 9 num. 1 - 2010  doi: 10.2202/1544-6115.1523

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[2-MSC10]

Two-dimensional electrophoresis gel images scan for decomposition and depletion analysis Osvaldo Marullo, Alessio Soggiu, Enrico Capobianco Advances in Adaptive Data Analysis pages 359--371 vol. 2 - 2010  doi: 10.1142/S1793536910000525

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[2-MTC10]

Inferring modules from human protein interactome classes Elisabetta Marras, Antonella Travaglione, Gautam Chaurasia, Matthias Futschick, Enrico Capobianco BMC Systems Biology vol. 102 num. 4 - 2010  doi: 10.1186/1752-0509-4-102

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[2-CAP10]

Gene feature interference deconvolution Enrico Capobianco Mathematical Biosciences pages 136–-146 vol. 227 - october 2010  doi: 10.1016/j.mbs.2010.07.003

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[2-SCC10]

A proteomic study of microgravity cardiac effects: feature maps of label-free lc-maldi data for differential expression analysis Rocchiccioli S, Enrico Congiu, Boccardi C, Citti L, Lagana A, Enrico Capobianco Molecular Biosystems pages 2218--2229 - august 2010  doi: 10.1039/C0MB00065E

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Peer-reviewed publications in international events

[4-TMC10]

Time scale network analysis from protein-protein interactions Antonella Travaglione, Elisabetta Marras, Enrico Capobianco WCSB2010 Proceedings - 2010

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Various talks, works and publications

[6-MTC10]

Dynamic modularization assessment in affine protein interaction networks Elisabetta Marras, Antonella Travaglione, Enrico Capobianco Contributed oral presentation, SIMAI 2010, Cagliari, June 21-25 - 2010

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[6-OTC10]

Untangling cancer transcriptomics sources for biomarker analysis Massimiliano Orsini, Antonella Travaglione, Enrico Capobianco Contributed poster at the Cancer Bioinformatics Workshop, Cancer Research UK Cambridge Research Institute, Cambridge, Sept 2-4, 2010 - 2010

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[6-TMC10]

Time scale network analysis from fragmented protein-protein interactions Antonella Travaglione, Elisabetta Marras, Enrico Capobianco Contributed poster at WCSB2010, Luxembourg, June - 2010

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[6-CAP10]

Network inference and applications to protein interactomes Enrico Capobianco Seminar, Institut Curie, Paris, May 13 2010 - may 2010

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[6-ECJ10]

Handling arbitrary unknown lineshape without introducing extra parameters Popa E, Enrico Capobianco, Van Der Veen JWC, R De Beer, Van Ormondt D, Graveron-Demilly D - may 2010

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[6-ECC10]

New results for metabolite quantitation with arbitrary lineshape Popa E, Enrico Capobianco, Van Der Veen J W C, R De Beer, Van Ormondt D, Graveron-Demilly D - january 2010

Peer-reviewed publications in International Journals

[2-MC09]

Mining protein-protein interaction networks: denoising effects Elisabetta Marras, Enrico Capobianco Journal of Statistical Mechanichs: Theory and Experiments - 2009  doi: 10.1088/1742-5468/2009/01/P01006

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[2-CAP09]

Entropy embedding and fluctuation analysis in genomic manifolds Enrico Capobianco Communications in Nonlinear Science and Numerical Simulation pages 2602-2618 vol. 14 num. 6 - 2009 issn: 1007-5704  doi: 10.1016/j.cnsns.2008.09.015

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[2-CAP09]

Aliasing in Gene Feature Detection by Projective Methods Enrico Capobianco Journal of Bioinformatics and Computational Biology pages 685--700 vol. 7 - 2009  doi: 10.1142/S0219720009004254

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[2-SMP09]

Baking up 2dge depletion with source separation and multiscale decomposition methods Alessio Soggiu, Osvaldo Marullo, Roncada P, Enrico Capobianco Biophysical Reviews and Letters pages 319- -330 vol. 4 num. 4 - october 2009  doi: 10.1142/S1793048009001071

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[2-ECD09]

In vivo quantitation of metabolites with an incomplete model function Popa E, Enrico Capobianco, R De Beer, Van Ormondt D, Graveron-Demilly D Measurement Science Technology, Special Issue Imaging Systems and Techniques, IOP Press pages 104032 vol. 20 num. 10 - september 2009  doi: 10.1088/0957-0233/20/10/104032

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[2-SMP09]

Empowering spot detection in 2de images by wavelet denoising Alessio Soggiu, Osvaldo Marullo, Roncada P, Enrico Capobianco In Silico Biology pages 125--133 vol. 9 - april 2009  doi: 10.3233/ISB-2009-0393

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Peer-reviewed publications in international events

[4-MC09]

Inference by mixture models in protein interactome networks. Elisabetta Marras, Enrico Capobianco WCSB 2009 Proceedings, TICSP 48 pages 119-122 - 2009

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Various talks, works and publications

[6-MTC09]

Inference by mixture models in protein interactome networks. Elisabetta Marras, Antonella Travaglione, Enrico Capobianco Contributed poster at the Sixth International Workshop on Computational Systems Biology, WCSB 2009 June 10-12, Aarhus, Denmark. Contributed poster at SAMSI - Stochastic Dynamics Program, Aug 30 - Sept 3, NC(USA) - 2009

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[6-MC09]

Network mixture models: protein interactomics inference Elisabetta Marras, Enrico Capobianco Contributed presentation at the 33rd SPA - Conference on Stochastic Processes and Their Applications, Berlin (DE), July - 2009

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[6-OC09]

Integration of genomic expression and copy number variation inference on their association in brain cancer Massimiliano Orsini, Enrico Capobianco - 2009

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[6-ECJ09]

New lineshape estimation for in vivo mr spectroscopy Popa E, Enrico Capobianco, Van Der Veen JWC, R De Beer, Van Ormondt D, Graveron-Demilly D Contributed presentation at ProRISC, Veldhoven (NL) - november 2009

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[6-CAP09]

Noise-dependent topological sensitivity in multiresolution protein networks Enrico Capobianco - september 2009

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[6-RCB09]

Label-free lc-maldi analysis: a proteomic study S. Rocchiccioli, Enrico Congiu, C. Boccardi, E. Laganá, Enrico Capobianco Contributed poster at the 3rd EuPA 2009 Conference, Stockholm, Sweden, June 14-17 - june 2009

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Contractual reports

[7-MC09]

Network mixture models: an introduction and application to protein interactome Elisabetta Marras, Enrico Capobianco IMA - Institute of Mathematics and its Applications, University of Minnesota (USA) techreport - 2009

Books and Book Chapters

[1-MC08]

Advances in human protein interactome inference Elisabetta Marras, Enrico Capobianco Functional and Operational Statistics, Physica-Verlag Dabo-Niang S. and Ferraty F. pages 89-94 Heidelberg incollection - 2008

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Peer-reviewed publications in International Journals

[2-CAP08]

Model validation for gene selection and regulation maps. Enrico Capobianco Funct Integr Genomics pages 87--99 vol. 8 num. 2 - 2008 issn: 1438-793X  doi: 10.1007/s10142-007-0066-3

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[2-CAP08]

Dimensionality reduction and greedy learning of convoluted stochastic dynamics Enrico Capobianco Nonlinear analysis: Real World Applications pages 1928-1941 vol. 9 num. 5 - 2008

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[2-CAP08]

Kernel methods and flexible inference for complex stochastic dynamics Enrico Capobianco Physica A: Statistical Mechanics and its Applications pages 4077-4098 vol. 387 num. 16-17 - 2008

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[2-CAP08]

Cascade systems denoising and greedy calibrated approximation Enrico Capobianco Journal of Interdisciplinary Mathematics pages 429-442 vol. 11 num. 3 - 2008

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[2-PDM08]

Protein networking: insights into global functional organization of proteomes Enrico Pieroni, Sergio de la Fuente van Bentem, Gianmaria Mancosu, Enrico Capobianco, Heribert Hirt, Alberto de la Fuente Proteomics pages 799-816 vol. 8 num. 4 - february 2008  doi: 10.1002/pmic.200700767

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Peer-reviewed publications in international events

[4-EDC08]

Lineshape estimation in in vivo mr spectroscopy without using a reference signal. Popa E., Graveron-Demilly D., Enrico Capobianco, R. de Beer, van Ormondt D. Proceedings IEEE Imaging, Systems and Techniques pages 315-320 - 2008

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[4-MC08]

Exploring protein interactome features Elisabetta Marras, Enrico Capobianco WCSB 2008 Proceedings, TICSP Series pages 105-108 num. 41 - 2008

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Various talks, works and publications

[6-ROC08]

Mir*ware: an approach for tissue-oriented micrornas-target mrnas data integration Frederic Reinier, Massimiliano Orsini, Enrico Capobianco Poster presented at the Non-Coding RNAs: Computational Challenges and Applications Workshop, 28-30 April, 2008, Antalya, Turkey - 2008

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[6-ECD08]

Lineshape estimation in in vivo mrs without using a reference signal Popa E, Enrico Capobianco, R De Beer, Van Ormondt D, Graveron-Demilly D Presentation (by E. Popa) at ESMRMB 2008 Congress 25th Annual Meeting, Valencia, Spain - 2008

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[6-HCD08]

Lineshape estimation in in vivo mrs without using a reference signal Rabeson H., Enrico Capobianco, R. de Beer, van Ormondt D., Graveron-Demilly D. Presentation (by D. van Ormondt) at ISMRM 2008, Toronto, Canada - 2008

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[6-ROC08]

Design and implementation of a micrornas-mrnas cancer warehouse Frederic Reinier, Massimiliano Orsini, Enrico Capobianco Poster presented at ECCB 2008, Cagliari, Italy, September - 2008

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[6-MTC08]

Inferring modularity from human protein interactome classes Elisabetta Marras, Antonella Travaglione, Gautam Chaurasia, Matthias Futschick, Enrico Capobianco Presentation at the International Workshop on Gene Signalling Pathway Analysis and Representation for the Dendritic Cells, I-Atlas 2008, Florence, Italy, November - 2008

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[6-CMF08]

Inferring modularity aspects from human interactome classes Gautam Chaurasia, Elisabetta Marras, Matthias Futschick, Enrico Capobianco Poster presented at ECCB2008, Cagliari, Italy - 2008

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[6-SMP08]

Backing up 2de depletion with wavelet detection methods Alessio Soggiu, Osvaldo Marullo, Roncada Paola, Enrico Capobianco Poster presented at ECCB 2008, Cagliari, Italy - 2008

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[6-MTC08]

Inferring modularity from human protein interactome classes. Elisabetta Marras, Antonella Travaglione, Gautam Chaurasia, Matthias Futschick, Enrico Capobianco Presentation at International Workshop on Gene Signalling Pathway Analysis and Representation for the Dendritic Cells, I-Atlas 2008. Florence, Italy. - november 2008

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[6-OC08]

Inferring the association of genomic expression and copy number variation. insights on brain cancer regulation Massimiliano Orsini, Enrico Capobianco Poster presented at "Leading applications and technologies in Bioinformatics", EMBnet Conference 2008, Martina Franca (TA), Italy - september 2008

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[6-EDC08]

Lineshape estimation in in vivo mrs without using a reference signal Popa E, Graveron-Demilly D, Enrico Capobianco, R De Beer, van Ormondt D. Presentation at IEEE-IST (Imaging Systems and Techniques) International Workshop - Chania, Greece - september 2008

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[6-SMC08]

Computational depletion as a new tool for analysis of serum proteome Alessio Soggiu, Osvaldo Marullo, Enrico Capobianco, Roncada Paola Poster presented at 5th Siena Meeting from Genome to Proteome: Functional Proteomics - september 2008

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[6-MTC08]

Protein interactomics: feature characterization and statistical learning Elisabetta Marras, Antonella Travaglione, Enrico Capobianco Poster presented at 5th European Congress of Mathematics, Amsterdam, The Netherlands - july 2008

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[6-MC08]

Pondering over protein-protein interactions Elisabetta Marras, Enrico Capobianco Poster presented at Sigma Phi 2008 Conference on Statistical Physics, Orthodox Academy of Crete 2008 - july 2008

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[6-MC08]

Exploring protein interactome features Elisabetta Marras, Enrico Capobianco Talk at the 5th International Workshop on Computational Systems Biology, WCSB 2008, June 11-13, 2008, Leipzig, Germany. - june 2008

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[6-MC08]

Advances in human protein interactome inference Elisabetta Marras, Enrico Capobianco Presentation at the 1st International Workshop on Functional and Operatorial Statistics, IWFOS 2008, University Paul Sabatier, Toulose, France - june 2008

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[6-MC08]

Mining protein-protein interaction networks: denoising effects Elisabetta Marras, Enrico Capobianco Poster presented at the 5th International Conference on Unsolved Problems on Noise and Fluctuations in Physics, Biology and High Technology, UPoN 2008, Ecole Normale Superieure de Lyon, France - june 2008

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[6-MC08]

Multiscale tour in protein interactomics Elisabetta Marras, Enrico Capobianco Poster presented at the IMA Annual Program Year Workshop Organization of Biological Networks, March 3-7, 2008 - march 2008

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[6-HCD08]

Correction des inhomogeneites de b-0 et des effets de courant de foucalt en spectrometrie, san utiliser un signal de reference Rabeson H., Enrico Capobianco, R. de Beer, van Ormondt D., Graveron-Demilly D. Presentation (by D. van Ormondt) at 12th GRAMM Conference, Lyon (FR) - march 2008

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[6-MC08]

Multiscale look in protein interactomics Elisabetta Marras, Enrico Capobianco Poster presented at Organization of Biological Networks, Annual Program Year Workshop - march 2008

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Contractual reports

[7-MC08]

A multiscale tour in protein interactomics Elisabetta Marras, Enrico Capobianco IMA, Institute for Mathematics and Its Applications, Univeristy of Minnesota num. Preprint S techreport - april 2008

Various talks, works and publications

[6-MC07]

Interactome inference by reducing dimensionality Elisabetta Marras, Enrico Capobianco Poster presented at the Integrative Bioinformatics Workshop, September 10-12, 2007 University of Ghent (Belgium) - 2007

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[6-PHM07]

Evolutive constraints for 'wiring' and characterizing human subproteomes Maria Persico, Robert Hoffmann, Elisabetta Marras, Enrico Capobianco Poster presented at the Italian Bioinformatics Society (BITS) Annual Meeting, Napoli, 26-28 April - 2007

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[6-HHC07]

Is spending extra scan time on measuring a macromolecule-only signal worthwhile? Rabeson H., Rabeson H., Enrico Capobianco, R. de Beer, van Ormondt D., Graveron-Demilly D. Poster presented at Joint Annual Meeting ISMRM-ESMRMB, Berlin - may 2007

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[6-MSP07]

2d gel electrophoresis image analysis Osvaldo Marullo, Alessio Soggiu, Roncada Paola, Patricia Rodriguez-Tomé, Enrico Capobianco poster - in 42 International Symposium Analytical Technologies: Tools and Implementation Strategies in Animal Science - Porto Conte Ricerche, Alghero - may 2007

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[6-CAP07]

Sieving genomic features by signal separation Enrico Capobianco Poster presented at the SAMSI Biosystems Modeling Workshop, Statistical and Applied Mathematical Sciences Institute, Raleigh-Durham, NC, USA, 5-7 March 2007 - march 2007

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Contractual reports

[7-CAP07]

Sieving genomic features by signal separation Enrico Capobianco Statistical and Applied Mathematical Sciences Institute, Raleigh-Durham, NC, USA num. 2007-03 techreport - march 2007

Peer-reviewed publications in international events

[4-HMH06]

Signal disentanglement in in vivo MR spectroscopy: by semi-parametric processing or by measurement? Rabeson H., Sosonkina M., Rabeson H., Cudalbu C., Campobasso S, Enrico Capobianco, R. de Beer, van Ormondt D., Graveron-Demilly D. ProRISC (conference proceedings), IEEE Benelux, Veldhoven, The Netherlands pages 176-183 - november 2006

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[4-CAP06]

Statistical embedding in complex biosystems Enrico Capobianco Integrative Bioinformatics 2006 Proceedings Book pages 117-135 Hofestadt R. and Topel T. - september 2006

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[4-HCD06]

Error bounds for semi-parametric estimation in mrs Rabeson H., Enrico Capobianco, R. de Beer, van Ormondt D., Graveron-Demilly D. Int. Soc. Magnetic Resonance in Medicine, 14th Scientific Meeting and Exhibition, Seattle, Washington, USA - 6-12 May 2006 pages 32 - 37 - may 2006

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Various talks, works and publications

[6-CAP06]

Learning latent dynamics in biological manifolds Enrico Capobianco Poster presented at the Integrative Post-Genomics, Lyon's international multidisciplinary meeting, Lyon (FR), 29, 30 November and 1 December, 2006 - december 2006

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[6-CAP06]

Statistical embedding in complex biosystems Enrico Capobianco Talk at the Integrative Bioinformatics, International Workshop, Rothamsted Research, Harpenden, UK, 4-6 September, 2006 - september 2006

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[6-CAP06]

Entropic embedding and fluctuation analysis in biological manifolds Enrico Capobianco Talk at the XVIII Congresso Nazionale della SIBPA, Società Italiana di Biofisica Pura e Applicata, Palermo, 17-21 September, 2006 - september 2006

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