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Publications en 2024

Peer-reviewed publications in International Journals

[2-DFM24]

A survey of openEHR Clinical Data Repositories

Giovanni Delussu, Francesca Frexia, Cecilia Mascia, Alessandro Sulis, Vittorio Meloni, Mauro Del Rio, Luca Lianas

International Journal of Medical Informatics Elsevier vol. 191 - november 2024 doi: 10.1016/j.ijmedinf.2024.105591

Publications en 2023

Peer-reviewed publications in International Journals

[2-RSL23]

Glyoxal acid-free (GAF) histological fixative is a suitable alternative to formalin: results from an open-label comparative non-inferiority study

Ales Ryska, Anna Sapino, Stefania Landolfi, Irene Sansano Valero, Santiago Ramon y Cajal, Pedro Oliveira, Paolo Detillo, Luca Lianas, Francesca Frexia, Pier Andrea Nicolosi, Tommaso Monti, Benedetta Bussolati, Caterina Marchiò, Giovanni Bussolati

Virchows Archiv Springer - november 2023 doi: 10.1007/s00428-023-03692-6

[2-DFM23]

Cohort Profile: the Turin Prostate Cancer Prognostication (TPCP) Cohort

Nicolas Destefanis, Valentina Fiano, Lorenzo Milani, Paolo Vasapolli, Michelangelo Fiorentino, Francesca Giunchi, Luca Lianas, Mauro Del Rio, Francesca Frexia, Luca Pireddu, Luca Molinaro, Paola Cassoni, MAURO GIULIO PAPOTTI, Paolo Gontero, Giorgio Calleris, Marco Oderda, Umberto Ricardi, Giuseppe Carlo Iorio, Fariselli Piero, Elena Isaevska, Olof Akre, Renata Zelic, Andreas Pettersson, Daniela Zugna, Lorenzo Richiardi

Frontiers in Oncology Frontiers vol. 13 - october 2023
issn: 2234-943X doi: 10.3389/fonc.2023.1242639

Various talks, works and publications

[6-RSL23]

Glyoxal Acid-Free (GAF) histological fixative is a suitable alternative to formalin – results from an open label comparative non-inferiority study

Pre-print medRxiv - https://www.medrxiv.org/content/10.1101/2023.05.24.23290451v1.full - medRxiv - https://www.medrxiv.org/content/10.1101/2023.05.24.23290451v1.full - may 2023

[6-LD23]

Digital Pathology “intelligente”: una piattaforma integrata per la ricerca clinica

Luca Lianas, Mauro Del Rio

Contriguto al congresso - - may 2023

Publications en 2022

Peer-reviewed publications in International Journals

[2-ZGC22]

Prognostic Utility of the Gleason Grading System Revisions and Histopathological Factors Beyond Gleason Grade

Renata Zelic, Francesca Giunchi, Jessica Carlsson, Sabina Davidsson, Luca Lianas, Cecilia Mascia, Daniela Zugna, Luca Molinaro, Per Henrik Vincent, Gianluigi Zanetti, Ove Andrén, Lorenzo Richiardi, Olof Akre, Michelangelo Fiorentino, Andreas Pettersson

Clinical Epidemiology Dovepress pages 59-70 num. 14 - january 2022 doi: 10.2147/CLEP.S339140

Peer-reviewed publications in international events

[4-DLA22]

AI support for accelerating histopathological slide examinations of prostate cancer in clinical studies

Mauro Del Rio, Luca Lianas, Oskar Aspegren, Giovanni Busonera, Francesco Versaci, Renata Zelic, Per Henrik Vincent, Simone Leo, Andreas Pettersson, Olof Akre, Luca Pireddu

ICIAP 2021 Proceedings Springer Image Analysis and Processing. ICIAP 2022 Workshops. ICIAP 2022. Lecture Notes in Computer Science pages 545-556 - 2022 doi: 10.1007/978-3-031-13321-3_48

Publications en 2021

Peer-reviewed publications in International Journals

[2-FML21]

openEHR is FAIR-Enabling by Design

Francesca Frexia, Cecilia Mascia, Luca Lianas, Giovanni Delussu, Alessandro Sulis, Vittorio Meloni, Mauro Del Rio, Gianluigi Zanetti

Stud Health Technol Inform IOS Press pages 113--117 vol. 281 - may 2021 doi: 10.3233/SHTI210131

[2-ZGL21]

Interchangeability of light and virtual microscopy for histopathological evaluation of prostate cancer

Renata Zelic, Francesca Giunchi, Luca Lianas, Cecilia Mascia, Gianluigi Zanetti, Ove Andrén, Jonna Fridfeldt, Jessica Carlsson, Sabina Davidsson, Luca Molinaro, Per Henrik Vincent, Lorenzo Richiardi, Olof Akre, Michelangelo Fiorentino, Andreas Pettersson

Nature Scientific Reports Nature Publishing Group vol. 11 num. 3257 - february 2021 doi: 10.1038/s41598-021-82911-z

Various talks, works and publications

[6-FML21]

openEHR is FAIR-Enabling by Design

Francesca Frexia, Cecilia Mascia, Luca Lianas, Giovanni Delussu, Alessandro Sulis, Vittorio Meloni, Mauro Del Rio, Gianluigi Zanetti

Presentation at the 31st Medical Informatics Europe 2021 Conference - - 2021

[6-LIA21]

ome_seadragon: a flexible Virtual Microscope for the Digital Pathology

Luca Lianas

Invited talk at the 2021 OME Community Meeting - https://youtu.be/q8ZUv6bfXIc - june 2021

Publications en 2020

Peer-reviewed publications in International Journals

[2-ZGF20]

Prognostic utility of the Gleason grading system revisions

Renata Zelic, Francesca Giunchi, Jonna Fridfeldt, Jessica Carlsson, Sabina Davidsson, Luca Lianas, Cecilia Mascia, Daniela Zugna, Luca Molinaro, Per Henrik Vincent, Gianluigi Zanetti, Ove Andrén, Lorenzo Richiardi, Olof Akre, Michelangelo Fiorentino, Andreas Pettersson

European Urology Open Science Elsevier pages 1890-1891 vol. Vol. 19, Suppl. 2 - july 2020 doi: 10.1016/S2666-1683(20)33873-8

Publications en 2019

Peer-reviewed publications in International Journals

[2-ZZB19]

Estimation of Relative and Absolute Risks in a Competing-Risks Setting Using a Nested Case-Control Study Design: Example From the ProMort Study

Renata Zelic, Daniela Zugna, Matteo Bottai, Ove Andrén, Jonna Fridfeldt, Jessica Carlsson, Sabina Davidsson, Valentina Fiano, Michelangelo Fiorentino, Francesca Giunchi, Chiara Grasso, Luca Lianas, Cecilia Mascia, Luca Molinaro, Gianluigi Zanetti, Lorenzo Richiardi, Andreas Pettersson, Olof Akre

American Journal of Epidemiology Oxford Academic pages 1165–1173 vol. 188 num. 6 - june 2019 doi: 10.1093/aje/kwz026

Various talks, works and publications

[6-FMU19]

Open standards for semantic interoperability of clinical and genomic data: a proof-of-concept bridging openEHR, Phenopacket and FHIR

Francesca Frexia, Cecilia Mascia, Paolo Uva, Luca Lianas, Giovanni Delussu, Gianluigi Zanetti, Heather Leslie, Silje Ljosland Bakke, Ian McNicoll, Gideon Giacomelli, Diego Boscà

Poster - Poster - GA4GH Plenary Meeting - october 2019

Publications en 2017

Various talks, works and publications

[6-ACL17]

Integration, processing, and data analysis in the operational support of a large scale NGS core facility

Rossano Atzeni, Gianmauro Cuccuru, Luca Lianas, Ricardo Medda, Luca Pireddu, Paolo Uva, Ilenia Zara, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at 14th Annual Meeting of the Bioinformatics Italian Society, July 5-7, 2017, Cagliari - july 2017

Publications en 2016

Peer-reviewed publications in International Journals

[2-DLF16]

A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

PLoS ONE plos one - december 2016 doi: 10.1371/journal.pone.0168004

[2-LPM16]

CyTest - A new platform for training and testing in cytopathology

Luca Lianas, Marco Enrico Piras, Elodia Musu, Simona Podda, Francesca Frexia, Emanuela Ovcin, Giovanni Bussolati, Gianluigi Zanetti

The Diagnostic pathology Journal pages 208 vol. 2 - august 2016
issn: 2364 - 4893 doi: 10.17629/www.diagnosticpathology.eu-2016-2:208

[2-LPM16]

CyTest – An Innovative Open-source Platform for Training and Testing in Cythopathology

Luca Lianas, Marco Enrico Piras, Elodia Musu, Simona Podda, Francesca Frexia, Emanuela Ovcin, Giovanni Bussolati, Gianluigi Zanetti

Procedia - Social and Behavioral Sciences pages 674–681 vol. 228 - july 2016 doi: 10.1016/j.sbspro.2016.07.103

Various talks, works and publications

[6-CAL16]

A robust and extensible framework for tracking biodata provenance, analysis workflows and results

Gianmauro Cuccuru, Rossano Atzeni, Luca Lianas, Ricardo Medda, Luca Pireddu, Paolo Uva, Ilenia Zara, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at Nettab, October 2016, Rome - october 2016

Publications en 2015

Various talks, works and publications

[6-CUO15]

Exploiting a large scale biodata management system to support NGS variant detection studies

Gianmauro Cuccuru, Paolo Uva, Stefano Onano, Rossano Atzeni, Simone Leo, Luca Lianas, Manuela Oppo, Luca Pireddu, Andrea Angius, Laura Crisponi, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at ISMB/ECCB, 10-14 July 2015, Dublin - 2015

[6-CLL15]

Combining enabling technologies to build the largest NGS core facility in Italy

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Massimiliano Orsini, Luca Pireddu, Andrea Sbardellati, Rossano Atzeni, Roberto Cusano, Manuela Oppo, Paolo Uva, Andrea Angius, Gianluigi Zanetti, Giorgio Fotia

Invited presentation to Biodata World Congress 2015, Hinxton, Cambridge, UK - 21-22 October - 2015 - 2015

Publications en 2014

Peer-reviewed publications in International Journals

[2-LPC14]

BioBlend.objects: metacomputing with Galaxy

Simone Leo, Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Nicola Soranzo, Enis Afgan, Gianluigi Zanetti

Bioinformatics Oxford University Press pages 2816-2817 vol. 30 num. 19 - 2014 doi: 10.1093/bioinformatics/btu386

Peer-reviewed publications in international events

[4-LFD14]

pyEHR: A scalable clinical data management toolkit for biomedical research projects

Luca Lianas, Francesca Frexia, Giovanni Delussu, Paolo Anedda, Gianluigi Zanetti

e-Health Networking, Applications and Services (Healthcom), 2014 IEEE 16th International Conference on E-health Networking, Application & Services IEEE pages 370-374 - october 2014 doi: 10.1109/HealthCom.2014.7001871

[4-CLL14]

An Automated Infrastructure to Support High-throughput Bioinformatics

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Michele Muggiri, Andrea Pinna, Luca Pireddu, Paolo Uva, Andrea Angius, Giorgio Fotia, Gianluigi Zanetti

Proc. IEEE International Conference on High Performance Computing & Simulation (HPCS 2014) IEEE pages 600-607 Smari, Waleed W. and Zeljkovic, Vesna Eds. - july 2014
isbn: 978-1-4799-5313-4 doi: 10.1109/HPCSim.2014.6903742

Publications en 2013

Peer-reviewed publications in International Journals

[2-PCL13]

Automated and traceable processing for large-scale high-throughput sequencing facilities

Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Matteo Vocale, Giorgio Fotia, Gianluigi Zanetti

EMBnet.journal pages 23--24 vol. 19 Supplement A - june 2013
issn: 2226-6089 doi: 10.14806/ej.19.A.626

Peer-reviewed publications in international events

[4-CFM13]

Reproducible and automated processing in high-throughput NGS facilities

Gianmauro Cuccuru, Giorgio Fotia, Josh Moore, Luca Lianas, Luca Pireddu, Jason R. Swedlow, Gianluigi Zanetti

Contributed presentation at the Galaxy Community Conference 2013, Oslo,Norway - 30 June, 2 July - 201 - 2013

[4-CFL13]

Scalability, Reproducibility and Traceability in Large Scale NGS Facilities

Gianmauro Cuccuru, Giorgio Fotia, Simone Leo, Luca Lianas, Massimiliano Orsini, Andrea Pinna, Luca Pireddu, Andrea Sbardellati, Nicola Soranzo, Paolo Uva, Gianluigi Zanetti

Contributed presentation to Clinical Genomics & Informatics Europe, Lisbon, Portugal - 4, 6 December - 2013

Publications en 2012

Peer-reviewed publications in International Journals

[2-ABM12]

OMERO: flexible, model-driven data management for experimental biology

Chris Allan, Jean-Marie Burel, Josh Moore, Colin Blackburn, Melissa Linkert, Scott Loynton, Donald MacDonald, William J. Moore, Carlos Neves, Andrew Patterson, Michael Porter, Aleksandra Tarkowska, Brian Loranger, Jerome Avondo, Ingvar Lagerstedt, Luca Lianas, Simone Leo, Katherine Hands, Ron T. Hay, Ardan Patwardhan, Christoph Best, Gerard J. Kleywegt, Gianluigi Zanetti, Jason R. Swedlow

Nature Methods pages 245--253 vol. 9 num. 3 - march 2012
issn: 1548-7091 doi: 10.1038/nmeth.1896

Peer-reviewed publications in international events

[4-ACL12]

Scalable data management and computable framework for large scale longitudinal studies

Chris Allan, Gianmauro Cuccuru, Simone Leo, Luca Lianas, Josh Moore, Maristella Pitzalis, Serena Sanna, Ilenia Zara, Jason R. Swedlow, Gianluigi Zanetti

Contributed presentation to Galaxy Community Conference 2012, Chicago (IL), United States - July 25 - 27 - 2012

[4-ZPZ12]

Sequencing-based and multiplatform Genome-Wide Association Study for Multiple Sclerosis and Type 1 Diabetes in Sardinians

Ilenia Zara, Eleonora Porcu, Magdalena Zoledziewska, Maristella Pitzalis, Maria Valentini, Antonella Mulas, Fabio Busonero, Rossano Atzeni, Manuela Oppo, Frederic Reinier, Riccardo Berutti, Rosella Pilu, Francesca Deidda, Carlo Sidore, Roberta Piras, Alessia Loi, Sonia Sanna, Eleonora Cocco, Fausto Poddie, Gabriele Farina, Giulio Rosati, Luca Lianas, Gianmauro Cuccuru, Gianluigi Zanetti, Andrea Angius, Maria Giovanna Marrosu, Christopher M. S. Jones, Gonçalo R. Abecasis, Serena Sanna, Francesco Cucca

ASHG (American Society of Human Genetics) 2012, San Francisco, USA - november 2012

Various talks, works and publications

[5-LIA12]

OMERO.biobank: un approccio flessibile per la gestione dati nell’ambito della biologia sperimentale

Luca Lianas

Collana seminari interni 2012 num. 20120523 - may 2012

Publications en 2011

Various talks, works and publications

[6-LCL11]

Scalable Data Management and Computable Framework for Large Scale Longitudinal Studies.

Luca Lianas, Gianmauro Cuccuru, Simone Leo, Ilenia Zara, Maristella Pitzalis, Magdalena Zoledziewska, Francesca Deidda, Serena Sanna, Gianluigi Zanetti

poster - 12th International Congress of Human Genetics (ICHG) - october 2011

Publications en 2010

Peer-reviewed publications in International Journals

[2-TTS10]

Cots technologies for telemedicine applications

Riccardo Triunfo, Roberto Tumbarello, Alessandro Sulis, Gianluigi Zanetti, Luca Lianas, Vittorio Meloni, Francesca Frexia

International Journal of Computer Assisted Radiology and Surgery pages 11--18 vol. 5 num. 1 - january 2010

Various talks, works and publications

[6-ZCL10]

COBIK - COMPUTABLE BIOBANKS

Gianluigi Zanetti, Gianmauro Cuccuru, Luca Lianas, Simone Leo, Riccardo Triunfo

Poster - IFHRO 2010 - XVI Congress of International Federation of Health Records Organizations - november 2010

[6-ZCL10]

Computable Biobanks

Gianluigi Zanetti, Gianmauro Cuccuru, Luca Lianas, Simone Leo

poster - Bridging the Gap in Biomedical Genetics: Integrating Bioinformatics and Medical Informatics, Research and Healthcare - october 2010

Contractual reports

[7-TSL10]

Standard aperti per la modellazione di dati clinici: openehr come interfaccia tra ricerca e pratica clinica

Riccardo Triunfo, Alessandro Sulis, Luca Lianas, Gianluigi Zanetti, Vittorio Meloni, Francesca Frexia

CRS4, Center for Advanced Studies, Research and Development in Sardinia Cagliari, Italy num. 10/100 techreport - september 2010

Publications en 2009

Books and Book Chapters

[1-TSZ09]

Soluzioni Open Source per l'integrazione di applicativi nei Sistemi Informativi Ospedalieri

Riccardo Triunfo, Alessandro Sulis, Gianluigi Zanetti, Luca Lianas, Francesca Frexia, Nicoletta Delogu

McGraw Hill, chap. 11, pages 89--100 - 2009

Peer-reviewed publications in international events

[4-TFZ09]

Tecnologie cots per la tele-ecocardiologia pediatrica

Riccardo Triunfo, Francesca Frexia, Gianluigi Zanetti, Luca Lianas, Vittorio Meloni, Roberto Tumbarello

10 Congresso Nazionale Dell'Associazione Italiana Di Telemedicina Ed Informatica Medica vol. 1 Associazione Italiana di Telemedicina ed Informatica Medica - 2009

[4-FTS09]

Standard aperti per la modellazione di dati clinici: openehr come interfaccia tra ricerca e pratica clinica

Francesca Frexia, Riccardo Triunfo, Alessandro Sulis, Luca Lianas, Gianluigi Zanetti, Vittorio Meloni

10 Congresso Nazionale Dell'Associazione Italiana Di Telemedicina Ed Informatica Medica vol. 1 Associazione Italiana di Telemedicina ed Informatica Medica - 2009

[4-STF09]

Soluzioni modulari open-source per l'interconnettivita' dei sistemi informativi e la loro integrazione in progetti di sanita' elettronica: l'uso di mirth per preservare l'identita' e l'integrita' anagrafica

Alessandro Sulis, Riccardo Triunfo, Francesca Frexia, Gianluigi Zanetti, Luca Lianas, Vittorio Meloni, Nicoletta Delogu

10 Congresso Nazionale Dell'Associazione Italiana Di Telemedicina Ed Informatica Medica vol. 1 Associazione Italiana di Telemedicina ed Informatica Medica - 2009

Publications en 2008

Peer-reviewed publications in International Journals

[2-MCP08]

Building a virtual archive using brain architecture and Web 3D to deliver neuropsychopharmacology content over the Internet

Raymond Mongeau, Maria Antonietta Casu, Luca Pani, Giuliano Pillolla, Luca Lianas, Andrea Giachetti

Computer Methods and Programs in Biomedicine Elseiver pages 124-136 vol. 90 - june 2008 doi: 10.1016/j.cmpb.2007.12.007

Peer-reviewed publications in national events

[5-TFZ08]

Sistema di diagnosi collaborativa per cardiologia pediatrica

Riccardo Triunfo, Francesca Frexia, Gianluigi Zanetti, Luca Lianas, Vittorio Meloni, Stefania Merella

9 Congresso Nazionale Dell'Associazione Italiana Di Telemedicina Ed Informatica Medica vol. 1 Associazione Italiana di Telemedicina ed Informatica Medica - 2008

Various talks, works and publications

[5-TLS08]

Soluzioni Open Source per la linearizzazione del problema di integrazione di applicativi nei sistemi informativi ospedalieri

Riccardo Triunfo, Luca Lianas, Alessandro Sulis, Gianluigi Zanetti, Nicoletta Delogu

PAAL - 2008

Contractual reports

[7-FLM08]

Sistema di diagnosi collaborativa per cardiologia pediatrica

Francesca Frexia, Luca Lianas, Vittorio Meloni, Stefania Merella, Alessandro Sulis, Riccardo Triunfo

CRS4, Center for Advanced Studies, Research and Development in Sardinia Cagliari, Italy num. 08/06 techreport - july 2008

Publications en 2007

Peer-reviewed publications in national events

[5-TSZ07]

Soluzioni opensource per l'integrazioni di applicativi nei sistemi informativi ospedalieri

Riccardo Triunfo, Alessandro Sulis, Gianluigi Zanetti, Luca Lianas, Nicoletta Delogu, Stefano Cocco, Alberto Vidili

8 Congresso Nazionale Dell'Associazione Italiana Di Telemedicina Ed Informatica Medica vol. 1 Associazione Italiana di Telemedicina ed Informatica Medica - 2007

Various talks, works and publications

[5-TFS07]

Soluzioni Open Source nella Pubblica Amministrazione: integrazione di sistemi clinici dell'Azienda Ospedaliera Brotzu di Cagliari

Riccardo Triunfo, Francesca Frexia, Alessandro Sulis, Luca Lianas, Nicoletta Delogu

Forum PA - 2007

46 publications Download the selection