Publications CRS4 - Equipe SCA

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Publications en 2017

Various talks, works and publications

[6-UCA17]

Impact of sample size in variant identification from exome sequencing data

Paolo Uva, Gianmauro Cuccuru, Rossano Atzeni, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at 14th Annual Meeting of the Bioinformatics Italian Society, July 5-7, 2017, Cagliari - july 2017

Contractual reports

[7-VPZ17]

Kafka Interfaces for Composable Streaming Genomics Pipelines

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

bioRxiv, Cold Spring Harbor Laboratory Publishing - august 2017

Publications en 2016

Peer-reviewed publications in International Journals

[2-SFM16]

Traceability Based Description of Clinical Processes: Extension of IHE Guidelines for Phlebotomy Workflows

Alessandro Sulis, Francesca Frexia, Vittorio Meloni, Massimo Gaggero, Mauro Del Rio, Riccardo Triunfo, Daniela Ghironi, Federico Caboni, Gianluigi Zanetti

EJBI - European Journal for Biomedical Informatics EuroMISE sr.o. pages en36--en44 vol. 12 - 2016

[2-CBZ16]

Transition to congestion in communication/computation networks for near-optimal and sub-optimal resource management via Montecarlo simulations

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Journal of Network and Computer Applications Elsevier - 2016 doi: 10.1016/j.jnca.2016.12.029

[2-DLF16]

A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

PLoS ONE plos one - december 2016 doi: 10.1371/journal.pone.0168004

[2-LPM16]

CyTest - A new platform for training and testing in cytopathology

Luca Lianas, Marco Enrico Piras, Elodia Musu, Simona Podda, Francesca Frexia, Emanuela Ovcin, Giovanni Bussolati, Gianluigi Zanetti

The Diagnostic pathology Journal pages 208 vol. 2 - august 2016
issn: 2364 - 4893 doi: 10.17629/www.diagnosticpathology.eu-2016-2:208

[2-LPM16]

CyTest – An Innovative Open-source Platform for Training and Testing in Cythopathology

Luca Lianas, Marco Enrico Piras, Elodia Musu, Simona Podda, Francesca Frexia, Emanuela Ovcin, Giovanni Bussolati, Gianluigi Zanetti

Procedia - Social and Behavioral Sciences pages 674–681 vol. 228 - july 2016 doi: 10.1016/j.sbspro.2016.07.103

[2-SBD16]

Recommendations on e-infrastructures for next-generation sequencing

Ola Spjuth, Erik Bongcam-Rudloff, Johan Dahlberg, Martin Dahlo, Aleksi Kallio, Luca Pireddu, Francesco Vezzi, Eija Korpelainen

GigaScience pages 1--9 vol. 5 num. 1 - june 2016
issn: 2047-217X doi: 10.1186/s13742-016-0132-7

Peer-reviewed publications in international events

[4-BCP16]

Spectral coherence analysis in EEG nocturnal epilepsy recordings

Giovanni Busonera, Marco Cogoni, M. Puligheddu, F. Marrosu, Gianluigi Zanetti

JOURNAL OF SLEEP RESEARCH WILEY-BLACKWELL JOURNAL OF SLEEP RESEARCH pages 160 vol. 25 - 2016

[4-CBP16]

Graph-theoretic analysis of nocturnal EEG recordings for NFLE patients and controls

Marco Cogoni, Giovanni Busonera, M. Puligheddu, F. Marrosu, Gianluigi Zanetti

JOURNAL OF SLEEP RESEARCH WILEY-BLACKWELL JOURNAL OF SLEEP RESEARCH pages 254 vol. 25 - 2016

[4-VPZ16]

Scalable genomics: from raw data to aligned reads on Apache YARN

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

IEEE BigData - 2016

Various talks, works and publications

[2-CBZ16]

Ultrametricity of optimal transport substates for multiple interacting paths over a square lattice network

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

arXiv:1611.04918 Cornell University Library - 2016 doi: arXiv:1611.04918

[6-SF16]

IHE PaLM Specimen Event Tracking (SET) Technical Framework Supplement

Alessandro Sulis, Francesca Frexia

- 2016

[6-CAL16]

A robust and extensible framework for tracking biodata provenance, analysis workflows and results

Gianmauro Cuccuru, Rossano Atzeni, Luca Lianas, Ricardo Medda, Luca Pireddu, Paolo Uva, Ilenia Zara, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at Nettab, October 2016, Rome - october 2016

[6-PVZ16]

Scalable genomics: from Raw Data to Aligned Reads on Apache Yarn

Luca Pireddu, Francesco Versaci, Gianluigi Zanetti

Poster presentation at Big Data In Biology and Health, EMBL Heidelberg, Germany. - september 2016

[6-VPZ16]

Flink in Genomics: Efficient and scalable processing of raw Illumina BCL data

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

Presentation at workshop FlinkForward 2016 - FlinkForward 2016 - september 2016

[6-PZ16]

The RAPI Read Aligner API

Luca Pireddu, Gianluigi Zanetti

Presentation at ISCB NGS 2016 - - april 2016

[2-VPZ16]

Scalable genomics: from raw data to aligned reads on Apache YARN

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

bioRxiv Cold Spring Harbor Labs Journals - february 2016 doi: 10.1101/071092

Publications en 2015

Peer-reviewed publications in International Journals

[2-SBC15]

Experiences with workflows for automating data-intensive bioinformatics

Ola Spjuth, Erik Bongcam-Rudloff, Guillermo Carrasco Hernández, Lukas Forer, Mario Giovacchini, Roman Valls Guimera, Aleksi Kallio, Eija Korpelainen, Maciej M Kańduła, Milko Krachunov, David P Kreil, Ognyan Kulev, Paweł P Łabaj, Samuel Lampa, Luca Pireddu, Sebastian Schönherr, Alexey Siretskiy, Dimitar Vassilev

Biology Direct vol. 10 num. 43 - august 2015 doi: 10.1186/s13062-015-0071-8

[2-MSG15]

HL7apy: a Python library to parse, create and handle HL7 v2.x messages

Vittorio Meloni, Alessandro Sulis, Daniela Ghironi, Francesco Cabras, Mauro Del Rio, Stefano Leone Monni, Massimo Gaggero, Francesca Frexia, Gianluigi Zanetti

EJBI - European Journal for Biomedical Informatics EuroMISE s.r.o. pages en31-en40 vol. 11 num. 2 - january 2015
issn: 1801 - 5603

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