Leo's Publications


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Publications in 2023
Peer-reviewed publications in International Journals
[2-WHM23]
Toward a common standard for data and specimen provenance in life sciences [Download PDF version]
Rudolf Wittner, Petr Holub, Cecilia Mascia, Francesca Frexia, Heimo Müeller, Markus Plass, Clare Allocca, Fay Betsou, Tony Burdett, Ibon Cancio, Adriane Chapman, Mélanie Courtot, Vasa Curcin, Johann Eder, Mark Elliot, Katrina Exter, Carole Goble, Martin Golebiewski, Bron Kisler, Andreas Kremer, Simone Leo, Sheng Lin-Gibson, Anna Marsano, Marco Mattavelli, Josh Moore, Hiroki Nakae, Isabelle Perseil, Ayat Salman, James Sluka, Stian Soiland-Reyes, Caterina Strambio, Michael Sussman, Jason R. Swedlow, Kurt Zatloukal, Jörg Geiger
Learning Health Systems pages e10365 - april 2023  doi: 10.1002/lrh2.10365
Various talks, works and publications
[6-LEO23]
RO-Crate for workflow run provenance
Simone Leo
Talk - CWL Conference 2023 - february 2023
 
Publications in 2022
Books and Book Chapters
[1-AAB22]
The DeepHealth toolkit: a key European free and open-source software for Deep Learning and Computer Vision ready to exploit heterogeneous HPC and cloud architectures
Marco Aldinucci, David Atienza, Federico Bolelli, Mónica Caballero, Iacopo Colonnelli, José Flich, Jon A. Gómez, David González, Costantino Grana, Marco Grangetto, Simone Leo, Pedro López, Dana Oniga, Roberto Paredes, Luca Pireddu, Eduardo Quiñones, Tatiana Silva, Enzo Tartaglione, Marina Zapater
Springer, chap. , pages 183-202 Chapter - april 2022
Peer-reviewed publications in International Journals
[2-SSC22]
Packaging research artefacts with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, Jose Maria Fernandez, Daniel Garijo, Bjorn Gruning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble
Data Science IOS Press pages 97-138 vol. 5 num. 2 - july 2022  doi: 10.3233/DS-210053
[2-C.L22]
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy Community, ..., Simone Leo, . ...
Nucleic Acids Research - april 2022
issn: 0305-1048  doi: 10.1093/nar/gkac247
Peer-reviewed publications in international events
[4-DLA22]
AI support for accelerating histopathological slide examinations of prostate cancer in clinical studies
Mauro Del Rio, Luca Lianas, Oskar Aspegren, Giovanni Busonera, Francesco Versaci, Renata Zelic, Per Henrik Vincent, Simone Leo, Andreas Pettersson, Olof Akre, Luca Pireddu
ICIAP 2021 Proceedings Springer Image Analysis and Processing. ICIAP 2022 Workshops. ICIAP 2022. Lecture Notes in Computer Science pages 545-556 - 2022  doi: 10.1007/978-3-031-13321-3_48
Various talks, works and publications
[2-SSC22]
Creating lightweight FAIR Digital Objects with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Leyla Jael Castro, Frederik Coppens, Daniel Garijo, Simone Leo, Marc Portier, Paul Groth
Research Ideas and Outcomes Pensoft Publishers pages e93937 vol. 8 - 2022  doi: 10.3897/rio.8.e93937
[2-DCS22]
Enhancing RDM in Galaxy by integrating RO-Crate
Paul De Geest, Frederik Coppens, Stian Soiland-Reyes, Ignacio Eguinoa, Simone Leo
Research Ideas and Outcomes Pensoft Publishers pages e95164 vol. 8 - 2022  doi: 10.3897/rio.8.e95164
[6-GBS22]
The WorkflowHub: A FAIR Registry for Workflows
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - ELIXIR All Hands 2022 - june 2022
 
Publications in 2021
Peer-reviewed publications in international events
[4-CCB21]
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications
Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon A. Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moreto, Costantino Grana
25th International Conference on Pattern Recognition IEEE - january 2021
Various talks, works and publications
[6-SSC21]
Packaging research artefacts with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, Jose Maria Fernandez, Daniel Garijo, Bjorn Gruning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble
Article - arXiv - august 2021
[6-GBS21]
The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - BOSC 2021 - july 2021
[6-LEO21]
Sustainability and Reuse: LifeMonitor
Simone Leo
Invited talk - Workflow Life Cycle Workshop, ELIXIR All Hands 2021 - june 2021
 
Publications in 2020
Peer-reviewed publications in International Journals
[2-GMA20]
Community standards for open cell migration data
Alejandra N. Gonzalez-Beltran, Paola Masuzzo, Cristophe Ampe, Gert-Jan Bakker, Sébastien Besson, Robert H. Eibl, Peter Friedl, Matthias Gunzer, Mark Kittisopikul, Sylvia E. Le Dévédec, Simone Leo, Josh Moore, Yael Paran, Jaime Prilusky, Philippe Rocca-Serra, Philippe Roudot, Marc Schuster, Gwendolien Sergeant, Staffan Strömblad, Jason R. Swedlow, Merijn van Erp, Marleen van Troys, Assaf Zaritsky, Susanna-Assunta Sansone, Lennart Martens
GigaScience Oxford University Press vol. 9 num. 5 - may 2020
issn: 2047-217X  doi: 10.1093/gigascience/giaa041
Various talks, works and publications
[6-GBS20]
The WorkflowHub: A FAIR registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Flora DAnna, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Ivan Topolsky, Alban Gaignard, Bjoern Gruening, Simone Leo, Luca Pireddu, Phil Ewels, Maciek Bak, Salvador Capella-Gutierrez, Michael R Crusoe, Frederik Coppens
Poster - International FAIR Convergence Symposium 2020 - november 2020
[6-LC20]
Testing workflows: Life Monitor and OpenEBench
Simone Leo, Salvador Capella-Gutierrez
Invited talk - ELIXIR Workshop on FAIR Computational Workflows, ECCB 2020 - september 2020
 
Publications in 2019
Various talks, works and publications
[5-BBC19]
TDM: un sistema aperto per l'acquisizione di dati, l'analisi e la simulazione su scala metropolitana [Download PDF version]
Fabio Bettio, Giovanni Busonera, Marco Cogoni, Roberto Deidda, Mauro Del Rio, Massimo Gaggero, Enrico Gobbetti, Simone Leo, Simone Manca, Marino Marrocu, Luca Massidda, Fabio Marton, Marco Enrico Piras, Luca Pireddu, Gabriella Pusceddu, Alessandro Seoni, Gianluigi Zanetti
Proc. GARR 2019 - Selected Papers pages 44--49 GARR - 2019  doi: 10.26314/GARR-Conf19-proceedings-09
[6-GMA19]
Community Standards for Open Cell Migration Data
Alejandra N. Gonzalez-Beltran, Paola Masuzzo, Cristophe Ampe, Gert-Jan Bakker, Sébastien Besson, Robert H. Eibl, Peter Friedl, Matthias Gunzer, Mark Kittisopikul, Sylvia E. Le Dévédec, Simone Leo, Josh Moore, Yael Paran, Jaime Prilusky, Philippe Rocca-Serra, Philippe Roudot, Marc Schuster, Gwendolien Sergeant, Staffan Strömblad, Jason R. Swedlow, Merijn van Erp, Marleen van Troys, Assaf Zaritsky, Susanna-Assunta Sansone, Lennart Martens
Article - bioRxiv - october 2019
 
Publications in 2018
Peer-reviewed publications in International Journals
[2-MUL18]
OpenEHR modeling for genomics in clinical practice
Cecilia Mascia, Paolo Uva, Simone Leo, Gianluigi Zanetti
International Journal of Medical Informatics Elsevier pages 147 - 156 vol. 120 - october 2018
issn: 1386-5056  doi: 10.1016/j.ijmedinf.2018.10.007
 
Publications in 2017
Peer-reviewed publications in International Journals
[2-WML17]
Image Data Resource: a bioimage data integration and publication platform
Eleanor Williams, Josh Moore, Simon W. Li, Gabriella Rustici, Aleksandra Tarkowska, Anatole Chessel, Simone Leo, Bálint Antal, Richard K. Ferguson, Ugis Sarkans, Alvis Brazma, Rafael E. Carazo Salas, Jason R. Swedlow
Nature Methods Nature Publishing Group pages 775--781 vol. 14 - june 2017  doi: 10.1038/nmeth.4326

Display the complete list (55 publications) Download the list
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