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14 publications Download the selection

Publications en 2024

Peer-reviewed publications in International Journals

[2-OCM24]

Linking the ECRIN Metadata Repository with the BBMRI-ERIC Directory to connect clinical studies with related biobanks and collections

Christian Ohmann, Steve Canham, Kurt Majcen, Vittorio Meloni, Luca Pireddu, Alessandro Sulis, Giovanni Delussu, Francesca Frexia, Petr Holub

Open Research Europe vol. 4 num. 50 - 2024 doi: 10.12688/openreseurope.17131.1

Publications en 2023

Peer-reviewed publications in International Journals

[2-PWH23]

Provenance of specimen and data – A prerequisite for AI development in computational pathology

Markus Plass, Rudolf Wittner, Petr Holub, Francesca Frexia, Cecilia Mascia, Matej Gallo, Heimo Müeller, Jörg Geiger

New Biotechnology European Federation of Biotechnology pages 22--28 vol. 78 - december 2023
issn: 1871-6784 doi: 10.1016/j.nbt.2023.09.006

[2-HMB23]

Privacy Risks of Whole-Slide Image Sharing in Digital Pathology

Petr Holub, Heimo Müeller, Tomáš Bíl, Luca Pireddu, Markus Plass, Fabian Prasser, Irene Schlünder, Kurt Zatloukal, Rudolf Nenutil, Tomáš Brázdil

Nature Communications Springer Nature pages 2577 vol. 14 - may 2023
issn: 2041-1723 doi: 10.1038/s41467-023-37991-y

[2-WHM23]

Toward a common standard for data and specimen provenance in life sciences

Rudolf Wittner, Petr Holub, Cecilia Mascia, Francesca Frexia, Heimo Müeller, Markus Plass, Clare Allocca, Fay Betsou, Tony Burdett, Ibon Cancio, Adriane Chapman, Mélanie Courtot, Vasa Curcin, Johann Eder, Mark Elliot, Katrina Exter, Carole Goble, Martin Golebiewski, Bron Kisler, Andreas Kremer, Simone Leo, Sheng Lin-Gibson, Anna Marsano, Marco Mattavelli, Josh Moore, Hiroki Nakae, Isabelle Perseil, Ayat Salman, James Sluka, Stian Soiland-Reyes, Caterina Strambio, Michael Sussman, Jason R. Swedlow, Kurt Zatloukal, Jörg Geiger

Learning Health Systems pages e10365 - april 2023 doi: 10.1002/lrh2.10365

Publications en 2022

Peer-reviewed publications in International Journals

[2-WMG22]

Lightweight Distributed Provenance Model for Complex Real-world Environments

Rudolf Wittner, Cecilia Mascia, Matej Gallo, Francesca Frexia, Heimo Müeller, Markus Plass, Jörg Geiger, Petr Holub

Scientific Data pages 503 vol. 9 - august 2022
issn: 2052-4463 doi: 10.1038/s41597-022-01537-6

[2-FMW22]

The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes

Francesca Frexia, Cecilia Mascia, Rudolf Wittner, Markus Plass, Heimo Müeller, Jörg Geiger, Petr Holub

Stud Health Technol Inform IOS Press pages 415 - 416 vol. 294 - may 2022 doi: 10.3233/SHTI220489

Various talks, works and publications

[6-JBG22]

Digital Use Conditions

Francis Jeanson, Alexander Bernier, Spencer Gibson, Anthony Brookes, Pinar Alper, Nancy Mah, Petr Holub, Ann K Novakowski, Esther van Enckevort, Annalisa Landi, Regina Becker, Stephanie Dyke, Daniel Mietchen, Mark Wilkinson, Oussama Benhamed, Georg Philip Krog, Megan Doerr, Morris Swertz, Adrian Thorogood, Alessandro Sulis, Francesca Frexia, et al.

Poster - Poster Session - 10th GA4GH Plenary Meeting - september 2022

[6-BOA22]

EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description

Jan Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Monica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Phil Gribbon, Petr Holub, Rebecca Ludwig, Michaela Th. Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sanchez Pla, Irene Schlünder, George Tsamis, Harald Wagener

Report - 10.48550/arXiv.2207.14296 - july 2022

[6-HMB22]

Privacy Risks of Whole-Slide Image Sharing in Digital Pathology

Petr Holub, Heimo Müeller, Tomáš Bíl, Luca Pireddu, Markus Plass, Fabian Prasser, Irene Schlünder, Kurt Zatloukal, Rudolf Nenutil, Tomáš Brázdil

preprint - medrxiv - april 2022

Publications en 2021

Peer-reviewed publications in international events

[4-WHM21]

ISO 23494: Biotechnology -- Provenance Information Model for Biological Specimen And Data

Rudolf Wittner, Petr Holub, Heimo Müeller, Carole Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio, David Grunwald, Hiroki Nakae

Provenance and Annotation of Data and Processes Springer International Publishing pages 222--225 Cham - 2021
isbn: 978-3-030-80960-7 doi: 10.1007/978-3-030-80960-7_16

Publications en 2020

Various talks, works and publications

[6-WHG20]

ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen and Data

Rudolf Wittner, Petr Holub, Jörg Geiger, Carole Goble, Heimo Müeller, Stian Soiland-Reyes, Elliot Fairweather, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Gianluigi Zanetti, Caterina Strambio, Josh Moore, David Grunwald, Jason R. Swedlow

Poster - ProvenanceWeek 2020 - june 2020

Publications en 2018

Peer-reviewed publications in International Journals

[2-PBB18]

PhenoMeNal: processing and analysis of metabolomics data in the cloud

Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy Ebbels, Carles Foguet, Robert Glen, Alejandra N. Gonzalez-Beltran, Ulrich L Günther, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Ibrahim Karaman, Bita Khalili, Payam Emami Khoonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Christian Ludwig, Pablo Moreno, Steffen Neumann, Jon Ander Novella, Claire O Donovan, Jake TM Pearce, Alina Peluso, Marco Enrico Piras, Luca Pireddu, Michelle AC Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A. Thévenot, Mattia Tomasoni, merlijn van Rijswijk, Michael van Vliet, Mark Viant, Ralf Weber, Gianluigi Zanetti, Christoph Steinbeck

GigaScience Oxford University Press vol. 8 - 2018
issn: 2047-217X doi: 10.1093/gigascience/giy149

[2-HKP18]

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health

Petr Holub, Floriant Kohlmayer, Fabian Prasser, Michaela Th. Mayrhofer, Irene Schlünder, Gillian M. Martin, Sara Casati, Lefteris Koumakis, Andrea Wutte, Lukasz Kozera, Dominik Strapagiel, Gabriele Anton, Gianluigi Zanetti, Osman Ugur Sezerman, Maimuna Mendy, Dalibor Valik, Marialuisa Lavitrano, Georges Dagher, Kurt Zatloukal, GertJan B. van Ommen, Jan-Eric Litton

Biopreservation and Biobanking vol. 16 num. 2 - april 2018 doi: 10.1089/bio.2017.0110

Various talks, works and publications

[2-PBB18]

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy Ebbels, Carles Foguet, Robert Glen, Alejandra N. Gonzalez-Beltran, Evangelos Handakas, Thomas Hankemeier, Stephanie Herman, Kenneth Haug, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Ibrahim Karaman, Bita Khalili, Payam Emami Khoonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Pablo Moreno, Steffen Neumann, Jon Ander Novella, Claire O Donovan, Jake TM Pearce, Alina Peluso, Luca Pireddu, Marco Enrico Piras, Michelle AC Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A. Thévenot, Mattia Tomasoni, merlijn van Rijswijk, Michael van Vliet, Mark Viant, Ralf Weber, Gianluigi Zanetti, Christoph Steinbeck

bioRxiv Cold Spring Harbor Laboratory - september 2018 doi: 10.1101/409151

14 publications Download the selection