merlijn van Rijswijk, Charlie Beirnaert, Christhophe Caron, Marta Cascante, Victoria Dominguez, Warwick Dunn, Timothy Ebbels, Franck Giacomoni, Alejandra Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose Izquierdo-Garcia, Rafael Jimenez, Fabien Jourdan, Namrata Kale, Maria Klapa, Olivier Kohlbacher, Kairl Koort, Kim Kultima, Gildas Le Corguille, Pablo Moreno, Nicholas Moschonas, Steffen Neumann, Claire O Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel Spicer, Ola Spjuth, Etienne A. Thévenot, Mark Viant, Ralf Weber, Egon Willighagen, Gianluigi Zanetti

F1000 Research - october 2017 doi: 10.12688/f1000research.12342.2

[2-PPZ17]

wft4galaxy: A Workflow Testing Tool for Galaxy

Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti

Bioinformatics Oxford University Press - july 2017 doi: 10.1093/bioinformatics/btx461

[2-CBZ17]

Ultrametricity of optimal transport substates for multiple interacting paths over a square lattice network

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Physical Review E Rapid Communications American Physical Society pages 030108 vol. 95 - march 2017 doi: 10.1103/PhysRevE.95.030108

Peer-reviewed publications in international events

[4-VPZ17]

Leveraging stream processing technology for genomics

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

14th Annual Meeting of the Bioinformatics Italian Society - 2017

[4-MUZ17]

Integrating genomic data information in EHR, a structured approach

Cecilia Mascia, Paolo Uva, Gianluigi Zanetti

14th Annual Meeting of the Bioinformatics Italian Society - 2017

Peer-reviewed publications in national events

[5-PPZ17]

Automating Galaxy Workflow Testing

Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti

14th Annual Meeting of the Bioinformatics Italian Society - 2017

Various talks, works and publications

[4-KMB17]

Interoperable and scalable metabolomics data analysis with microservices

Payam Emami Khoonsari, Pablo Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth

bioRxiv Cold Spring Harbor Laboratory - november 2017 doi: 10.1101/213603

[6-VPZ17]

Distributed stream processing for genomics pipelines

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

poster - NETTAB 2017 Workshop on Methods, tools & platforms for Personalized Medicine in the Big Data Era - october 2017

[2-MUL17]

OpenEHR modeling for genomics in clinical practice

Cecilia Mascia, Paolo Uva, Simone Leo, Gianluigi Zanetti

bioRxiv - september 2017

[6-VPZ17]

Flink in genomics: Integrating Flink and Kafka in the standard genomic pipeline

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

Presentation at workshop FlinkForward 2017 - FlinkForward 2017 - september 2017

[2-PPZ17]

wft4galaxy: A Workflow Tester for Galaxy

Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti

bioRxiv Cold Spring Harbor Labs Journals - july 2017 doi: 10.1101/132001

[6-ACL17]

Integration, processing, and data analysis in the operational support of a large scale NGS core facility

Rossano Atzeni, Gianmauro Cuccuru, Luca Lianas, Ricardo Medda, Luca Pireddu, Paolo Uva, Ilenia Zara, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at 14th Annual Meeting of the Bioinformatics Italian Society, July 5-7, 2017, Cagliari - july 2017

[6-UCA17]

Impact of sample size in variant identification from exome sequencing data

Paolo Uva, Gianmauro Cuccuru, Rossano Atzeni, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at 14th Annual Meeting of the Bioinformatics Italian Society, July 5-7, 2017, Cagliari - july 2017

Contractual reports

[7-VPZ17]

Kafka Interfaces for Composable Streaming Genomics Pipelines

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

bioRxiv, Cold Spring Harbor Laboratory Publishing - august 2017

Publications en 2016

Peer-reviewed publications in International Journals

[2-CBZ16]

Transition to congestion in communication/computation networks for near-optimal and sub-optimal resource management via Montecarlo simulations

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Journal of Network and Computer Applications Elsevier - 2016 doi: 10.1016/j.jnca.2016.12.029

[2-SFM16]

Traceability Based Description of Clinical Processes: Extension of IHE Guidelines for Phlebotomy Workflows

Alessandro Sulis, Francesca Frexia, Vittorio Meloni, Massimo Gaggero, Mauro Del Rio, Riccardo Triunfo, Daniela Ghironi, Federico Caboni, Gianluigi Zanetti

EJBI - European Journal for Biomedical Informatics EuroMISE sr.o. pages en36--en44 vol. 12 - 2016

[2-ABB16]

Making sense of big data in health research: Towards an EU action plan

Charles Auffrey, Rudi Bailing, Ines Barroso, Laszlo Bencze, Mikael Benson, Jay Bergeron, Enrique Bernal-Delgado, Niklas Blomberg, Christhop Bock, Ana Conesa, Susanna Del Signore, Christhophe Delogne, Peter Devilee, Alberto Di Meglio, Marinus Eijkemans, Paul Flicek, Norbert Graf, Vera Grimm, Henk-Jan Guchelaar, Yi-Ke Guo, Ivo Glynne Gut, Allan Hanbury, Shahid Hanif, Ralf-Dieter Hilgers, Angel Honrado, D. Rod Hose, Jeanine Houwing-Duistemaat, Tim Hubbard, Sophie Helen Janacek, Haralampos Karanikas, Tim Kievits, Manfred Kohler, Andreas Kremer, Jerry Lanfear, Thomas Lengauer, Theo Meert, Edith Maes, Werner Mueller, Dorthe Nickel, Peter Oledzki, Bertrand Pedersen, Milan Petkovic, Kostantinos Pliakos, Magnus Rattray, Josep Redon i mas, Reinhard Schneider, Thierry Sengstag, Xavier Serra-Picamal, Wouter Spek, Lea Vaas, Okker van Batemburg, Marc Vandelaer, Peter Varnai, Pablo Vollioalada, Juan Antonio Vizcaino, John Wubbe, Gianluigi Zanetti

Genome Medicine pages 1--13 vol. 8 num. 71 - 2016 doi: 10.1186/s13073-016-0323-y

[2-DLF16]

A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

PLoS ONE plos one - december 2016 doi: 10.1371/journal.pone.0168004

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