Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy Ebbels, Carles Foguet, Robert Glen, Alejandra N. Gonzalez-Beltran, Ulrich L Günther, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Ibrahim Karaman, Bita Khalili, Payam Emami Khoonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Christian Ludwig, Pablo Moreno, Steffen Neumann, Jon Ander Novella, Claire O Donovan, Jake TM Pearce, Alina Peluso, Marco Enrico Piras, Luca Pireddu, Michelle AC Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A. Thévenot, Mattia Tomasoni, merlijn van Rijswijk, Michael van Vliet, Mark Viant, Ralf Weber, Gianluigi Zanetti, Christoph Steinbeck

GigaScience Oxford University Press vol. 8 - 2018
issn: 2047-217X doi: 10.1093/gigascience/giy149

[2-MUL18]

OpenEHR modeling for genomics in clinical practice

Cecilia Mascia, Paolo Uva, Simone Leo, Gianluigi Zanetti

International Journal of Medical Informatics Elsevier pages 147 - 156 vol. 120 - october 2018
issn: 1386-5056 doi: 10.1016/j.ijmedinf.2018.10.007

[2-HKP18]

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health

Petr Holub, Floriant Kohlmayer, Fabian Prasser, Michaela Th. Mayrhofer, Irene Schlünder, Gillian M. Martin, Sara Casati, Lefteris Koumakis, Andrea Wutte, Lukasz Kozera, Dominik Strapagiel, Gabriele Anton, Gianluigi Zanetti, Osman Ugur Sezerman, Maimuna Mendy, Dalibor Valik, Marialuisa Lavitrano, Georges Dagher, Kurt Zatloukal, GertJan B. van Ommen, Jan-Eric Litton

Biopreservation and Biobanking vol. 16 num. 2 - april 2018 doi: 10.1089/bio.2017.0110

Peer-reviewed publications in international events

[4-VPZ18]

Kafka Interfaces for Composable Streaming Genomics Pipelines

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

IEEE Conference on Biomedical and Health Informatics (BHI) - 2018

[4-DMF18]

Augmented Reality for Supporting Real Time Telementoring: An Exploratory Study Applied to Ultrasonography

Mauro Del Rio, Vittorio Meloni, Francesca Frexia, Francesco Cabras, Roberto Tumbarello, Sabrina Montis, Andrea Marini, Gianluigi Zanetti

Proceedings of the 2Nd International Conference on Medical and Health Informatics ACM ICMHI '18 pages 218--222 ACM New York, NY, USA - 2018
isbn: 978-1-4503-6389-1 doi: 10.1145/3239438.3239444

Various talks, works and publications

[2-PBB18]

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy Ebbels, Carles Foguet, Robert Glen, Alejandra N. Gonzalez-Beltran, Evangelos Handakas, Thomas Hankemeier, Stephanie Herman, Kenneth Haug, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Ibrahim Karaman, Bita Khalili, Payam Emami Khoonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Pablo Moreno, Steffen Neumann, Jon Ander Novella, Claire O Donovan, Jake TM Pearce, Alina Peluso, Luca Pireddu, Marco Enrico Piras, Michelle AC Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A. Thévenot, Mattia Tomasoni, merlijn van Rijswijk, Michael van Vliet, Mark Viant, Ralf Weber, Gianluigi Zanetti, Christoph Steinbeck

bioRxiv Cold Spring Harbor Laboratory - september 2018 doi: 10.1101/409151

Publications en 2017

Peer-reviewed publications in International Journals

[2-VBC17]

The future of metabolomics in ELIXIR

merlijn van Rijswijk, Charlie Beirnaert, Christhophe Caron, Marta Cascante, Victoria Dominguez, Warwick Dunn, Timothy Ebbels, Franck Giacomoni, Alejandra N. Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose Izquierdo-Garcia, Rafael Jimenez, Fabien Jourdan, Namrata Kale, Maria Klapa, Olivier Kohlbacher, Kairl Koort, Kim Kultima, Gildas Le Corguille, Pablo Moreno, Nicholas Moschonas, Steffen Neumann, Claire O Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel Spicer, Ola Spjuth, Etienne A. Thévenot, Mark Viant, Ralf Weber, Egon Willighagen, Gianluigi Zanetti

F1000 Research - october 2017 doi: 10.12688/f1000research.12342.2

[2-PPZ17]

wft4galaxy: A Workflow Testing Tool for Galaxy

Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti

Bioinformatics Oxford University Press - july 2017 doi: 10.1093/bioinformatics/btx461

[2-CBZ17]

Ultrametricity of optimal transport substates for multiple interacting paths over a square lattice network

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Physical Review E Rapid Communications American Physical Society pages 030108 vol. 95 - march 2017 doi: 10.1103/PhysRevE.95.030108

Peer-reviewed publications in international events

[4-VPZ17]

Leveraging stream processing technology for genomics

Francesco Versaci, Luca Pireddu, Gianluigi Zanetti

14th Annual Meeting of the Bioinformatics Italian Society - 2017

[4-MUZ17]

Integrating genomic data information in EHR, a structured approach

Cecilia Mascia, Paolo Uva, Gianluigi Zanetti

14th Annual Meeting of the Bioinformatics Italian Society - 2017

[4-PPZ17]

Automating Galaxy Workflow Testing

Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti

14th Annual Meeting of the Bioinformatics Italian Society - 2017

Various talks, works and publications

[4-KMB17]

Interoperable and scalable metabolomics data analysis with microservices

Payam Emami Khoonsari, Pablo Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth

bioRxiv Cold Spring Harbor Laboratory - november 2017 doi: 10.1101/213603

[6-VPZ17]

Distributed stream processing for genomics pipelines