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Publications de Zanetti au CRS4

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Publications en 2013

Peer-reviewed publications in international events

[4-CFL13]

Scalability, Reproducibility and Traceability in Large Scale NGS Facilities

Gianmauro Cuccuru, Giorgio Fotia, Simone Leo, Luca Lianas, Massimiliano Orsini, Andrea Pinna, Luca Pireddu, Andrea Sbardellati, Nicola Soranzo, Paolo Uva, Gianluigi Zanetti

Contributed presentation to Clinical Genomics & Informatics Europe, Lisbon, Portugal - 4, 6 December - 2013

Various talks, works and publications

[6-COS13]

Engaging Galaxy in Microbiology

Gianmauro Cuccuru, Massimiliano Orsini, Nicola Soranzo, Andrea Pinna, Andrea Sbardellati, Antonella Travaglione, Paolo Uva, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at the Galaxy Community Conference 2013, Oslo,Norway - 30 June, 2 July - 2013

[6-MPL13]

Dynamic Hadoop clusters on HPC scheduling systems

Michele Muggiri, Luca Pireddu, Simone Leo, Gianluigi Zanetti

Contributed presentation to the 2013 Workshop on Middleware for HPC and Big Data Systems (part of Euro-Par 2013) - august 2013

[6-PLZ13]

An Update on the Seal Hadoop-based Sequencing Processing Toolbox

Luca Pireddu, Simone Leo, Gianluigi Zanetti

Contributed presentation to the 14th Bioinformatics Open Source Conference - july 2013

[2-MBC13]

Integration Site Analysis in a Clinical Trial of Lentiviral Vector Based Hematopoietic Stem Cell Gene Therapy for Metachromatic Leukodystrophy. An 18 Months Follow-Up

Eugenio Montini, Alessandra Biffi, Andrea Calabria, Luca Biasco, Martina Cesani, Fabrizio Benedicenti, Tiziana Plati, Simone Leo, Victor Neduva, Gianluigi Zanetti, Alessandro Aiuti, David J. Dow, Christof von Kalle, Manfred Schmidt, Maria Sessa, Luigi Naldini

Molecular Therapy Nature Publishing Group pages S119 vol. 21 num. S1 - june 2013

[6-SHP13]

Scripting for large-scale sequencing based on Hadoop

André Schumacher, Keijo Heljanko, Luca Pireddu, Gianluigi Zanetti, Aleksi Kallio, Eija Korpelainen

poster - The Next NGS Challenge Conference: Data Processing and Integration 14-16 May 2013, Valencia, Spain - may 2013

Contractual reports

[7-BCZ13]

Quality assessment for different haplotyping methods and GWAS sensitivity to phasing errors

Giovanni Busonera, Marco Cogoni, Gianluigi Zanetti

CRS4 - 2013

Publications en 2012

Peer-reviewed publications in International Journals

[2-ABM12]

OMERO: flexible, model-driven data management for experimental biology

Chris Allan, Jean-Marie Burel, Josh Moore, Colin Blackburn, Melissa Linkert, Scott Loynton, Donald MacDonald, William J. Moore, Carlos Neves, Andrew Patterson, Michael Porter, Aleksandra Tarkowska, Brian Loranger, Jerome Avondo, Ingvar Lagerstedt, Luca Lianas, Simone Leo, Katherine Hands, Ron T. Hay, Ardan Patwardhan, Christoph Best, Gerard J. Kleywegt, Gianluigi Zanetti, Jason R. Swedlow

Nature Methods pages 245--253 vol. 9 num. 3 - march 2012
issn: 1548-7091 doi: 10.1038/nmeth.1896

Peer-reviewed publications in international events

[4-ACL12]

Scalable data management and computable framework for large scale longitudinal studies

Chris Allan, Gianmauro Cuccuru, Simone Leo, Luca Lianas, Josh Moore, Maristella Pitzalis, Serena Sanna, Ilenia Zara, Jason R. Swedlow, Gianluigi Zanetti

Contributed presentation to Galaxy Community Conference 2012, Chicago (IL), United States - July 25 - 27 - 2012

[4-LPZ12]

SNP genotype calling with MapReduce

Simone Leo, Luca Pireddu, Gianluigi Zanetti

Proceedings of the third international workshop on MapReduce and its Applications ACM MapReduce '12 pages 49--56 - 2012
isbn: 978-1-4503-1343-8 doi: 10.1145/2287016.2287026

[4-ZPZ12]

Sequencing-based and multiplatform Genome-Wide Association Study for Multiple Sclerosis and Type 1 Diabetes in Sardinians

Ilenia Zara, Eleonora Porcu, Magdalena Zoledziewska, Maristella Pitzalis, Maria Valentini, Antonella Mulas, Fabio Busonero, Rossano Atzeni, Manuela Oppo, Frederic Reinier, Riccardo Berutti, Rosella Pilu, Francesca Deidda, Carlo Sidore, Roberta Piras, Alessia Loi, Sonia Sanna, Eleonora Cocco, Fausto Poddie, Gabriele Farina, Giulio Rosati, Luca Lianas, Gianmauro Cuccuru, Gianluigi Zanetti, Andrea Angius, Maria Giovanna Marrosu, Christopher M. S. Jones, Gonçalo R. Abecasis, Serena Sanna, Francesco Cucca

ASHG (American Society of Human Genetics) 2012, San Francisco, USA - november 2012

Various talks, works and publications

[5-ZAN12]

Possibili architetture di seminario e pseudo use-cases

Gianluigi Zanetti

Collana seminari interni 2012 num. 20120215 - february 2012

Publications en 2011

Peer-reviewed publications in International Journals

[2-PLZ11]

SEAL: a distributed short read mapping and duplicate removal tool

Luca Pireddu, Simone Leo, Gianluigi Zanetti

Bioinformatics pages 2159--2160 vol. 27 num. 15 - 2011 doi: 10.1093/bioinformatics/btr325

[2-SZB11]

Channeling the data deluge

Jason R. Swedlow, Gianluigi Zanetti, Christoph Best

Nature Methods Nature Publishing Group pages 463--465 vol. 8 num. 6 - 2011 doi: 10.1038/nmeth.1616

[2-MSC11]

Assessing the impact of lentiviral vector integration on splicing of cellular genes at the genome-wide level

Eugenio Montini, Jacopo Sgualdino, Daniela Cesana, Fabrizio Benedicenti, Stefania Merella, Simone Leo, Gianluigi Zanetti, Luigi Naldini

Retrovirology BioMed Central Ltd pages 1--2 vol. 8 num. Suppl 2 - october 2011 doi: 10.1186/1742-4690-8-S2-O15

[2-BBC11]

Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection

Alessandra Biffi, Cynthia C. Bartolomae, Daniela Cesana, Natalie Cartier, Patrick Aubourg, Marco Ranzani, Martina Cesani, Fabrizio Benedicenti, Tiziana Plati, Enrico Rubagotti, Stefania Merella, Alessia Capotondo, Jacopo Sgualdino, Gianluigi Zanetti, Christof von Kalle, Manfred Schmidt, Luigi Naldini, Eugenio Montini

Blood American Society of Hematology pages 5332--5339 vol. 117 num. 20 - may 2011 doi: 10.1182/blood-2010-09-306761

Peer-reviewed publications in international events

[4-PLZ11]

MapReducing a genomic sequencing workflow

Luca Pireddu, Simone Leo, Gianluigi Zanetti

Proceedings of the second international workshop on MapReduce and its applications ACM pages 67--74 - 2011 doi: 10.1145/1996092.1996106

[4-PLZ11]

The Seal suite of distributed software for high-throughput sequencing

Luca Pireddu, Simone Leo, Gianluigi Zanetti

SEQAHEAD MC Business Meeting and Scientific Meeting pages 23 vol. 17 SEQAHEAD COST action BM1006 Brussels - november 2011 doi: 10.14806/ej.17.B.267

Various talks, works and publications

[6-LCL11]

Scalable Data Management and Computable Framework for Large Scale Longitudinal Studies.

Luca Lianas, Gianmauro Cuccuru, Simone Leo, Ilenia Zara, Maristella Pitzalis, Magdalena Zoledziewska, Francesca Deidda, Serena Sanna, Gianluigi Zanetti

poster - 12th International Congress of Human Genetics (ICHG) - october 2011

[6-LZV11]

Efficient computing of genotype calling for GWAS

Simone Leo, Ilenia Zara, Maria Valentini, Serena Sanna, Gianluigi Zanetti

poster - 12th International Congress of Human Genetics (ICHG) - october 2011

Afficher toute la liste (199 publications) Download the selection

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