Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Alberto de la Fuente, Andrea Pinna, Nicola Soranzo, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez

BMC Systems Biology pages 13 vol. 8 - 2014 doi: 10.1186/1752-0509-8-13

[2-COP14]

Orione, a web-based framework for NGS analysis in microbiology

Gianmauro Cuccuru, Massimiliano Orsini, Andrea Pinna, Andrea Sbardellati, Nicola Soranzo, Antonella Travaglione, Paolo Uva, Gianluigi Zanetti, Giorgio Fotia

Bioinformatics Oxford University Press pages 1928-1929 vol. 30 num. 13 - 2014 doi: 10.1093/bioinformatics/btu135

Peer-reviewed publications in international events

[4-CLL14]

An Automated Infrastructure to Support High-throughput Bioinformatics

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Michele Muggiri, Andrea Pinna, Luca Pireddu, Paolo Uva, Andrea Angius, Giorgio Fotia, Gianluigi Zanetti

Proc. IEEE International Conference on High Performance Computing & Simulation (HPCS 2014) IEEE pages 600-607 Smari, Waleed W. and Zeljkovic, Vesna Eds. - july 2014
isbn: 978-1-4799-5313-4 doi: 10.1109/HPCSim.2014.6903742

Thesis and academic qualification

[9-PIN14]

Simulation and Identification of Gene Regulatory Networks

Andrea Pinna

PhD Program in Electronic and Computer Engineering, DRIEI, UNICA - 2014

Publications en 2013

Books and Book Chapters

[1-PSD13]

Simulation of the Benchmark Datasets

Andrea Pinna, Nicola Soranzo, Alberto de la Fuente, Ina Hoeschele

Gene Network Inference, Springer Berlin Heidelberg de la Fuente, Alberto pages 1-8 chap. 1 - 2013

Peer-reviewed publications in International Journals

[2-PHF13]

Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation

Andrea Pinna, Sandra Heise, Robert J Flassig, Alberto de la Fuente, Steffen Klamt

BMC Systems Biology BioMed Central vol. 7 num. 73 - 2013 doi: 10.1186/1752-0509-7-73

Peer-reviewed publications in international events

[4-CFL13]

Scalability, Reproducibility and Traceability in Large Scale NGS Facilities

Gianmauro Cuccuru, Giorgio Fotia, Simone Leo, Luca Lianas, Massimiliano Orsini, Andrea Pinna, Luca Pireddu, Andrea Sbardellati, Nicola Soranzo, Paolo Uva, Gianluigi Zanetti

Contributed presentation to Clinical Genomics & Informatics Europe, Lisbon, Portugal - 4, 6 December - 2013

Various talks, works and publications

[6-COS13]

Engaging Galaxy in Microbiology

Gianmauro Cuccuru, Massimiliano Orsini, Nicola Soranzo, Andrea Pinna, Andrea Sbardellati, Antonella Travaglione, Paolo Uva, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at the Galaxy Community Conference 2013, Oslo,Norway - 30 June, 2 July - 2013

[6-SOC13]

Microbiome profiling on a Galaxy-based framework for Microbiology

Nicola Soranzo, Stefano Onano, Gianmauro Cuccuru, Massimiliano Orsini, Andrea Pinna, Andrea Sbardellati, Paolo Uva, Giorgio Fotia

Poster presentation at the Galaxy Community Conference 2013, Oslo,Norway - 30 June, 2 July - 2013

[6-PSH13]

Simulating Systems Genetics with SysGenSIM

Andrea Pinna, Nicola Soranzo, Ina Hoeschele, Alberto de la Fuente

Poster contribution at StatSeq meeting on Gene Network Inference with Systems Genetics data - - march 2013

Contractual reports

[7-PSH13]

SysGenSIM (release 1.1)

Andrea Pinna, Nicola Soranzo, Ina Hoeschele, Alberto de la Fuente

CRS4 Bioinformatica Research Note - 2013

Publications en 2012

Peer-reviewed publications in International Journals

[2-MCK12]

Wisdom of crowds for robust gene network inference

Daniel Marbach, James C. Costello, Robert Küffner, Nicole M. Vega, Robert J. Prill, Diogo M. Camacho, Kyle R. Allison, Alberto de la Fuente, Vincenzo De Leo, Andrea Pinna, Nicola Soranzo, Manolis Kellis, James J. Collins, Gustavo Stolovitzky

Nature Methods pages 796-804 vol. 9 num. 8 - 2012 doi: 10.1038/nmeth.2016

Contractual reports

[7-PSH12]

StatSeq Systems Genetics Benchmark

Andrea Pinna, Nicola Soranzo, Ina Hoeschele, Alberto de la Fuente

CRS4 / StatSeq Description of published synthetic Systems Genetics datasets - 2012

[7-OCU12]

A course in Next Generation Sequencing data analysis using Galaxy

Massimiliano Orsini, Gianmauro Cuccuru, Paolo Uva, Vincenzo De Leo, Andrea Pinna, Andrea Sbardellati, Nicola Soranzo, Antonella Travaglione, Giorgio Fotia

CRS4 Course and praticals material, IZS G. Caporale, Teramo - november 2012

Publications en 2011

Peer-reviewed publications in International Journals

[2-PSH11]

Simulating system genetics data with SysGenSIM

Andrea Pinna, Nicola Soranzo, Ina Hoeschele, Alberto de la Fuente

Bioinformatics pages 2459-2462 vol. 27 num. 17 - 2011 doi: 10.1093/bioinformatics/btr407

Various talks, works and publications

[6-PSH11]

Simulating Large Systems Genetics Datasets for the Evaluation of Analysis Methods

Andrea Pinna, Nicola Soranzo, Ina Hoeschele, Alberto de la Fuente

Poster contribution at RECOMB 2011 Systems Biology Conference - - 2011