Publications CRS4 - Equipe SCA

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Publications en 2011

Peer-reviewed publications in International Journals

[2-SZB11]

Channeling the data deluge

Jason R. Swedlow, Gianluigi Zanetti, Christoph Best

Nature Methods Nature Publishing Group pages 463--465 vol. 8 num. 6 - 2011 doi: 10.1038/nmeth.1616

[2-MSC11]

Assessing the impact of lentiviral vector integration on splicing of cellular genes at the genome-wide level

Eugenio Montini, Jacopo Sgualdino, Daniela Cesana, Fabrizio Benedicenti, Stefania Merella, Simone Leo, Gianluigi Zanetti, Luigi Naldini

Retrovirology BioMed Central Ltd pages 1--2 vol. 8 num. Suppl 2 - october 2011 doi: 10.1186/1742-4690-8-S2-O15

[2-BBC11]

Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection

Alessandra Biffi, Cynthia C. Bartolomae, Daniela Cesana, Natalie Cartier, Patrick Aubourg, Marco Ranzani, Martina Cesani, Fabrizio Benedicenti, Tiziana Plati, Enrico Rubagotti, Stefania Merella, Alessia Capotondo, Jacopo Sgualdino, Gianluigi Zanetti, Christof von Kalle, Manfred Schmidt, Luigi Naldini, Eugenio Montini

Blood American Society of Hematology pages 5332--5339 vol. 117 num. 20 - may 2011 doi: 10.1182/blood-2010-09-306761

Peer-reviewed publications in international events

[4-PLZ11]

MapReducing a genomic sequencing workflow

Luca Pireddu, Simone Leo, Gianluigi Zanetti

Proceedings of the second international workshop on MapReduce and its applications ACM pages 67--74 - 2011 doi: 10.1145/1996092.1996106

[4-TSF11]

Open Source Integration Engines for Safer Hospitals. A Case Study.

Riccardo Triunfo, Alessandro Sulis, Francesca Frexia

World of Health IT Conference 2011 HIMSS Rue de la Loi 67 B-1040 Brussels - 2011

[4-PLZ11]

The Seal suite of distributed software for high-throughput sequencing

Luca Pireddu, Simone Leo, Gianluigi Zanetti

SEQAHEAD MC Business Meeting and Scientific Meeting pages 23 vol. 17 SEQAHEAD COST action BM1006 Brussels - november 2011 doi: 10.14806/ej.17.B.267

[4-LAG11]

DISCOVERY, Beyond the Clouds - DIStributed and COoperative framework to manage Virtual EnviRonments autonomicallY: a prospective study

Adrien Lebre, Paolo Anedda, Massimo Gaggero, Flavien Quesnel

Virtualization for High Performance Cloud Computing workshop (colocated with EUROPAR 2011) - august 2011

Various talks, works and publications

[6-PIR11]

Il calcolo su larga scala: dall'analisi dei dati genetici all'analisi del web

Luca Pireddu

presentation - Notte dei Ricercatori, 2011 - october 2011

[6-LCL11]

Scalable Data Management and Computable Framework for Large Scale Longitudinal Studies.

Luca Lianas, Gianmauro Cuccuru, Simone Leo, Ilenia Zara, Maristella Pitzalis, Magdalena Zoledziewska, Francesca Deidda, Serena Sanna, Gianluigi Zanetti

poster - 12th International Congress of Human Genetics (ICHG) - october 2011

[6-PLR11]

Scaling with the flow: advantages of a MapReduce-based scalable and high-throughput sequencing workflow

Luca Pireddu, Simone Leo, Frederic Reinier, Riccardo Berutti, Rossano Atzeni, Gianluigi Zanetti

poster - International Conference on Human Genetics (ICHG) 2012, Montreal, Canada - october 2011

[6-LZV11]

Efficient computing of genotype calling for GWAS

Simone Leo, Ilenia Zara, Maria Valentini, Serena Sanna, Gianluigi Zanetti

poster - 12th International Congress of Human Genetics (ICHG) - october 2011

[6-PLZ11]

A Distributed and High-Throughput Short Read Processing Suite

Luca Pireddu, Simone Leo, Gianluigi Zanetti

poster - HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms - july 2011

[6-LEO11]

Python MapReduce Programming with Pydoop

Simone Leo

talk - EuroPython 2011 - june 2011

Publications en 2010

Peer-reviewed publications in International Journals

[2-MCS10]

A Comparison of Y-Chromosome Variation in Sardinia and Anatolia Is More Consistent with Cultural Rather than Demic Diffusion of Agriculture

Laura Morelli, Daniela Contu, Federico Andrea Santoni, Michael Whalen, Paolo Francalacci, Francesco Cucca

PLoS ONE pages e10419 vol. 5 num. 4 - 2010 doi: 10.1371/journal.pone.0010419

[2-BFP10]

Exploiting Dynamic Partial Reconfiguration of FPGAs for Software Debugging

Giovanni Busonera, Alessandro Forin, Richard Neil Pittman

Transactions on High-Performance Embedded Architectures and Compilers (Transactions on HiPEAC) Springer vol. Volume 5, Issue 2 - 2010

[2-SHL10]

Deciphering the code for retroviral integration target site selection

Federico Andrea Santoni, Oliver Hartley, Jeremy Luban

PLoS Comput Biol pages e1001008 vol. 6 num. 11 - november 2010

[2-ALM10]

Suspending, migrating and resuming hpc virtual clusters

Paolo Anedda, Simone Leo, Simone Manca, Massimo Gaggero, Gianluigi Zanetti

Future Generation Computer Systems pages 1063--1072 vol. 26 num. 8 - october 2010

[2-TTS10]

Cots technologies for telemedicine applications

Riccardo Triunfo, Roberto Tumbarello, Alessandro Sulis, Gianluigi Zanetti, Luca Lianas, Vittorio Meloni, Francesca Frexia

International Journal of Computer Assisted Radiology and Surgery pages 11--18 vol. 5 num. 1 - january 2010

Peer-reviewed publications in international events

[4-LZ10]

Pydoop: a python mapreduce and hdfs api for hadoop

Simone Leo, Gianluigi Zanetti

Proceedings Of The 19th ACM International Symposium On High Performance Distributed Computing ACM HPDC 2010 pages 819--825 - 2010

[4-LAG10]

Using virtual clusters to decouple computation and data management in high throughput analysis applications

Simone Leo, Paolo Anedda, Massimo Gaggero, Gianluigi Zanetti

Proceedings Of The 18th Euromicro Conference On Parallel, Distributed And Network-Based Processing IEEE Computer Society pages 411--415 M. Danelutto et al. Los Alamitos, CA, USA - 2010

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