Publications de Leo au CRS4



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Publications en 2024
Peer-reviewed publications in International Journals
[2-LCR24]
Recording provenance of workflow runs with RO-Crate
Simone Leo, Michael R Crusoe, Laura Rodriguez Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, Jose Maria Fernandez, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno P. Kinoshita, Stian Soiland-Reyes
PLoS ONE Public Library of Science pages e0309210 vol. 19 num. 9 - september 2024  doi: 10.1371/journal.pone.0309210
 
Publications en 2023
Peer-reviewed publications in International Journals
[2-WHM23]
Toward a common standard for data and specimen provenance in life sciences [Download PDF version]
Rudolf Wittner, Petr Holub, Cecilia Mascia, Francesca Frexia, Heimo Müeller, Markus Plass, Clare Allocca, Fay Betsou, Tony Burdett, Ibon Cancio, Adriane Chapman, Mélanie Courtot, Vasa Curcin, Johann Eder, Mark Elliot, Katrina Exter, Carole Goble, Martin Golebiewski, Bron Kisler, Andreas Kremer, Simone Leo, Sheng Lin-Gibson, Anna Marsano, Marco Mattavelli, Josh Moore, Hiroki Nakae, Isabelle Perseil, Ayat Salman, James Sluka, Stian Soiland-Reyes, Caterina Strambio, Michael Sussman, Jason R. Swedlow, Kurt Zatloukal, Jörg Geiger
Learning Health Systems pages e10365 - april 2023  doi: 10.1002/lrh2.10365
Peer-reviewed publications in international events
[4-GBS23]
The EOSC-Life Workflow Collaboratory for the Life Sciences [Download PDF version]
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Bjorn Gruning, Simone Leo, Luca Pireddu, Michael R Crusoe, Johan Gustafsson, Salvador Capella-Gutierrez, Frederik Coppens
Proceedings of the 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities TIB Open Publishing vol. 1 York Sure-Vetter, Carole Goble - september 2023
issn: 2941-296X  doi: 10.52825/cordi.v1i.352
Various talks, works and publications
[6-LCR23]
Recording provenance of workflow runs with RO-Crate
Simone Leo, Michael R Crusoe, Laura Rodriguez Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, Jose Maria Fernandez, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno P. Kinoshita, Stian Soiland-Reyes
preprint - arXiv - december 2023
[6-LEO23]
RO-Crate and workflow execution provenance
Simone Leo
Invited talk - OSA2Micro – An Open Science Approach for Microbiology data integration - july 2023
[6-GBS23]
WorkflowHub – a fair registry for workflows
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Marco Enrico Piras, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - ELIXIR All Hands 2023 - june 2023
[6-LRF23]
Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate
Simone Leo, Laura Rodriguez Navas, Jose Maria Fernandez, Paul De Geest, Luca Pireddu, Michael R Crusoe, Daniel Garijo, Iacopo Colonnelli, Raül Sirvent, Stian Soiland-Reyes
Poster - ELIXIR All Hands 2023 - june 2023
[6-SLC23]
Sharing data as machine-actionable objects using RO-Crate, Bioschemas and Signposting
Stian Soiland-Reyes, Simone Leo, Leyla Jael Castro, Peter Sefton, Carole Goble
Poster - ELIXIR All Hands 2023 - june 2023
[6-LEO23]
RO-Crate for workflow run provenance
Simone Leo
Talk - CWL Conference 2023 - february 2023
 
Publications en 2022
Books and Book Chapters
[1-AAB22]
The DeepHealth toolkit: a key European free and open-source software for Deep Learning and Computer Vision ready to exploit heterogeneous HPC and cloud architectures
Marco Aldinucci, David Atienza, Federico Bolelli, Mónica Caballero, Iacopo Colonnelli, José Flich, Jon A. Gómez, David González, Costantino Grana, Marco Grangetto, Simone Leo, Pedro López, Dana Oniga, Roberto Paredes, Luca Pireddu, Eduardo Quiñones, Tatiana Silva, Enzo Tartaglione, Marina Zapater
Springer, chap. , pages 183-202 Chapter - april 2022
Peer-reviewed publications in International Journals
[2-SSC22]
Packaging research artefacts with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, Jose Maria Fernandez, Daniel Garijo, Bjorn Gruning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble
Data Science IOS Press pages 97-138 vol. 5 num. 2 - july 2022  doi: 10.3233/DS-210053
[2-C.L22]
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy Community, ..., Simone Leo, . ...
Nucleic Acids Research - april 2022
issn: 0305-1048  doi: 10.1093/nar/gkac247
Peer-reviewed publications in international events
[4-DLA22]
AI support for accelerating histopathological slide examinations of prostate cancer in clinical studies
Mauro Del Rio, Luca Lianas, Oskar Aspegren, Giovanni Busonera, Francesco Versaci, Renata Zelic, Per Henrik Vincent, Simone Leo, Andreas Pettersson, Olof Akre, Luca Pireddu
ICIAP 2021 Proceedings Springer Image Analysis and Processing. ICIAP 2022 Workshops. ICIAP 2022. Lecture Notes in Computer Science pages 545-556 - 2022  doi: 10.1007/978-3-031-13321-3_48
Various talks, works and publications
[2-SSC22]
Creating lightweight FAIR Digital Objects with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Leyla Jael Castro, Frederik Coppens, Daniel Garijo, Simone Leo, Marc Portier, Paul Groth
Research Ideas and Outcomes Pensoft Publishers pages e93937 vol. 8 - 2022  doi: 10.3897/rio.8.e93937
[2-DCS22]
Enhancing RDM in Galaxy by integrating RO-Crate
Paul De Geest, Frederik Coppens, Stian Soiland-Reyes, Ignacio Eguinoa, Simone Leo
Research Ideas and Outcomes Pensoft Publishers pages e95164 vol. 8 - 2022  doi: 10.3897/rio.8.e95164
[6-GBS22]
The WorkflowHub: A FAIR Registry for Workflows
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - ELIXIR All Hands 2022 - june 2022
 
Publications en 2021
Peer-reviewed publications in international events
[4-CCB21]
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications
Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon A. Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moreto, Costantino Grana
25th International Conference on Pattern Recognition IEEE - january 2021
Various talks, works and publications
[6-SSC21]
Packaging research artefacts with RO-Crate
Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, Jose Maria Fernandez, Daniel Garijo, Bjorn Gruning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble
Article - arXiv - august 2021
[6-GBS21]
The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - BOSC 2021 - july 2021
[6-LEO21]
Sustainability and Reuse: LifeMonitor
Simone Leo
Invited talk - Workflow Life Cycle Workshop, ELIXIR All Hands 2021 - june 2021

Afficher toute la liste (62 publications) Download the selection
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