Publications de Pireddu au CRS4


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Publications en 2024
Peer-reviewed publications in International Journals
[2-OCM24]
Linking the ECRIN Metadata Repository with the BBMRI-ERIC Directory to connect clinical studies with related biobanks and collections
Christian Ohmann, Steve Canham, Kurt Majcen, Vittorio Meloni, Luca Pireddu, Alessandro Sulis, Giovanni Delussu, Francesca Frexia, Petr Holub
Open Research Europe vol. 4 num. 50 - 2024  doi: 10.12688/openreseurope.17131.1
[2-LCR24]
Recording provenance of workflow runs with RO-Crate
Simone Leo, Michael R Crusoe, Laura Rodriguez Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, Jose Maria Fernandez, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno P. Kinoshita, Stian Soiland-Reyes
PLoS ONE Public Library of Science pages e0309210 vol. 19 num. 9 - september 2024  doi: 10.1371/journal.pone.0309210
 
Publications en 2023
Peer-reviewed publications in International Journals
[2-DFM23]
Cohort Profile: the Turin Prostate Cancer Prognostication (TPCP) Cohort
Nicolas Destefanis, Valentina Fiano, Lorenzo Milani, Paolo Vasapolli, Michelangelo Fiorentino, Francesca Giunchi, Luca Lianas, Mauro Del Rio, Francesca Frexia, Luca Pireddu, Luca Molinaro, Paola Cassoni, MAURO GIULIO PAPOTTI, Paolo Gontero, Giorgio Calleris, Marco Oderda, Umberto Ricardi, Giuseppe Carlo Iorio, Fariselli Piero, Elena Isaevska, Olof Akre, Renata Zelic, Andreas Pettersson, Daniela Zugna, Lorenzo Richiardi
Frontiers in Oncology Frontiers vol. 13 - october 2023
issn: 2234-943X  doi: 10.3389/fonc.2023.1242639
[2-HMB23]
Privacy Risks of Whole-Slide Image Sharing in Digital Pathology
Petr Holub, Heimo Müeller, Tomáš Bíl, Luca Pireddu, Markus Plass, Fabian Prasser, Irene Schlünder, Kurt Zatloukal, Rudolf Nenutil, Tomáš Brázdil
Nature Communications Springer Nature pages 2577 vol. 14 - may 2023
issn: 2041-1723  doi: 10.1038/s41467-023-37991-y
Peer-reviewed publications in international events
[4-GBS23]
The EOSC-Life Workflow Collaboratory for the Life Sciences [Download PDF version]
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Bjorn Gruning, Simone Leo, Luca Pireddu, Michael R Crusoe, Johan Gustafsson, Salvador Capella-Gutierrez, Frederik Coppens
Proceedings of the 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities TIB Open Publishing vol. 1 York Sure-Vetter, Carole Goble - september 2023
issn: 2941-296X  doi: 10.52825/cordi.v1i.352
Various talks, works and publications
[6-LCR23]
Recording provenance of workflow runs with RO-Crate
Simone Leo, Michael R Crusoe, Laura Rodriguez Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, Jose Maria Fernandez, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno P. Kinoshita, Stian Soiland-Reyes
preprint - arXiv - december 2023
[6-GBS23]
WorkflowHub – a fair registry for workflows
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Marco Enrico Piras, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - ELIXIR All Hands 2023 - june 2023
[6-LRF23]
Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate
Simone Leo, Laura Rodriguez Navas, Jose Maria Fernandez, Paul De Geest, Luca Pireddu, Michael R Crusoe, Daniel Garijo, Iacopo Colonnelli, Raül Sirvent, Stian Soiland-Reyes
Poster - ELIXIR All Hands 2023 - june 2023
 
Publications en 2022
Books and Book Chapters
[1-AAB22]
The DeepHealth toolkit: a key European free and open-source software for Deep Learning and Computer Vision ready to exploit heterogeneous HPC and cloud architectures
Marco Aldinucci, David Atienza, Federico Bolelli, Mónica Caballero, Iacopo Colonnelli, José Flich, Jon A. Gómez, David González, Costantino Grana, Marco Grangetto, Simone Leo, Pedro López, Dana Oniga, Roberto Paredes, Luca Pireddu, Eduardo Quiñones, Tatiana Silva, Enzo Tartaglione, Marina Zapater
Springer, chap. , pages 183-202 Chapter - april 2022
Peer-reviewed publications in international events
[4-DLA22]
AI support for accelerating histopathological slide examinations of prostate cancer in clinical studies
Mauro Del Rio, Luca Lianas, Oskar Aspegren, Giovanni Busonera, Francesco Versaci, Renata Zelic, Per Henrik Vincent, Simone Leo, Andreas Pettersson, Olof Akre, Luca Pireddu
ICIAP 2021 Proceedings Springer Image Analysis and Processing. ICIAP 2022 Workshops. ICIAP 2022. Lecture Notes in Computer Science pages 545-556 - 2022  doi: 10.1007/978-3-031-13321-3_48
Various talks, works and publications
[6-BOA22]
EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description
Jan Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Monica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Phil Gribbon, Petr Holub, Rebecca Ludwig, Michaela Th. Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sanchez Pla, Irene Schlünder, George Tsamis, Harald Wagener
Report - 10.48550/arXiv.2207.14296 - july 2022
[6-GBS22]
The WorkflowHub: A FAIR Registry for Workflows
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - ELIXIR All Hands 2022 - june 2022
[6-HMB22]
Privacy Risks of Whole-Slide Image Sharing in Digital Pathology
Petr Holub, Heimo Müeller, Tomáš Bíl, Luca Pireddu, Markus Plass, Fabian Prasser, Irene Schlünder, Kurt Zatloukal, Rudolf Nenutil, Tomáš Brázdil
preprint - medrxiv - april 2022
 
Publications en 2021
Peer-reviewed publications in International Journals
[2-JBC21]
ISA API: An open platform for interoperable life science experimental metadata
David Johnson, Dominique Batista, Kevin Cochrane, Robert P Davey, Anthony Etuk, Alejandra N. Gonzalez-Beltran, Kenneth Haug, Massimiliano Izzo, Martin Larralde, Thomas N Lawson, Alice Minotto, Pablo Moreno, Venkata Chandrasekhar Nainala, Claire O Donovan, Luca Pireddu, Pierrick Roger, Felix Shaw, Christoph Steinbeck, Ralf Weber, Susanna-Assunta Sansone, Philippe Rocca-Serra
GigaScience Oxford University Press vol. 10 num. 9 - september 2021  doi: 10.1093/gigascience/giab060
Peer-reviewed publications in international events
[4-WHM21]
ISO 23494: Biotechnology -- Provenance Information Model for Biological Specimen And Data
Rudolf Wittner, Petr Holub, Heimo Müeller, Carole Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio, David Grunwald​, Hiroki Nakae
Provenance and Annotation of Data and Processes Springer International Publishing pages 222--225 Cham - 2021
isbn: 978-3-030-80960-7  doi: 10.1007/978-3-030-80960-7_16
[4-CCB21]
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications
Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon A. Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moreto, Costantino Grana
25th International Conference on Pattern Recognition IEEE - january 2021
Various talks, works and publications
[6-GBS21]
The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens
Poster - BOSC 2021 - july 2021
 
Publications en 2020
Peer-reviewed publications in international events
[4-MFU20]
The openEHR Genomics Project
Cecilia Mascia, Francesca Frexia, Paolo Uva, Gianluigi Zanetti, Luca Pireddu, Gideon Giacomelli, Christina Jaeger-Schmidt, Aurelie Tomczak, Simon Schumacher, Florian Kraecher, Roland Eils, Silje Ljosland Bakke, Heather Leslie
Digital Personalized Health and Medicine - Proceedings of MIE 2020 IOS Press Studies in Health Technology and Informatics pages 443 - 447 vol. Volume 270 European Federation for Medical Informatics (EFMI) - 2020  doi: 10.3233/SHTI200199
Various talks, works and publications
[6-GBS20]
The WorkflowHub: A FAIR registry for Workflows and Workflow Research Objects
Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Flora DAnna, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Ivan Topolsky, Alban Gaignard, Bjoern Gruening, Simone Leo, Luca Pireddu, Phil Ewels, Maciek Bak, Salvador Capella-Gutierrez, Michael R Crusoe, Frederik Coppens
Poster - International FAIR Convergence Symposium 2020 - november 2020
[6-WHG20]
ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen and Data
Rudolf Wittner, Petr Holub, Jörg Geiger, Carole Goble, Heimo Müeller, Stian Soiland-Reyes, Elliot Fairweather, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Gianluigi Zanetti, Caterina Strambio, Josh Moore, David Grunwald​, Jason R. Swedlow
Poster - ProvenanceWeek 2020 - june 2020

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