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Publications en 2025

Peer-reviewed publications in international events

[4-SSL25]

Practical webby FDOs With RO-Crate and FAIR Signposting: Experiences and Lessons Learned

Stian Soiland-Reyes, Peter Sefton, Simone Leo, Leyla Jael Castro, Claus Weiland, Herbert Van De Sompel

Open Conference Proceedings vol. 5 - 2025 doi: 10.52825/ocp.v5i.1273

Publications en 2024

Peer-reviewed publications in International Journals

[2-LCR24]

Recording provenance of workflow runs with RO-Crate

Simone Leo, Michael R Crusoe, Laura Rodriguez Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, Jose Maria Fernandez, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutierrez, Renske de Wit, Bruno P. Kinoshita, Stian Soiland-Reyes

PLoS ONE Public Library of Science pages e0309210 vol. 19 num. 9 - september 2024 doi: 10.1371/journal.pone.0309210

Various talks, works and publications

[6-SSL24]

RO-Crate community update 2024

Stian Soiland-Reyes, Peter Sefton, Simone Leo, Leyla Jael Castro, Claus Weiland, RO-Crate Community

Manuscript submitted for publication. In International FAIR Digital Objects Implementation Summit 2024 TIB Open Publishing. - 2024

[6-SSL24]

Practical webby FDOs with RO-Crate and FAIR Signposting: Experiences and lessons learned.

Stian Soiland-Reyes, Peter Sefton, Simone Leo, Leyla Jael Castro, Claus Weiland, Herbert Van De Sompel

Manuscript submitted for publication. In Open Conference Proceedings: International FAIR Digital Objects Implementation Summit 2024 - 2024

Publications en 2023

Peer-reviewed publications in International Journals

[2-WHM23]

Toward a common standard for data and specimen provenance in life sciences

Rudolf Wittner, Petr Holub, Cecilia Mascia, Francesca Frexia, Heimo Müeller, Markus Plass, Clare Allocca, Fay Betsou, Tony Burdett, Ibon Cancio, Adriane Chapman, Mélanie Courtot, Vasa Curcin, Johann Eder, Mark Elliot, Katrina Exter, Carole Goble, Martin Golebiewski, Bron Kisler, Andreas Kremer, Simone Leo, Sheng Lin-Gibson, Anna Marsano, Marco Mattavelli, Josh Moore, Hiroki Nakae, Isabelle Perseil, Ayat Salman, James Sluka, Stian Soiland-Reyes, Caterina Strambio, Michael Sussman, Jason R. Swedlow, Kurt Zatloukal, Jörg Geiger

Learning Health Systems pages e10365 - april 2023 doi: 10.1002/lrh2.10365

Peer-reviewed publications in international events

[4-GBS23]

The EOSC-Life Workflow Collaboratory for the Life Sciences

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Bjorn Gruning, Simone Leo, Luca Pireddu, Michael R Crusoe, Johan Gustafsson, Salvador Capella-Gutierrez, Frederik Coppens

Proceedings of the 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities TIB Open Publishing vol. 1 York Sure-Vetter, Carole Goble - september 2023
issn: 2941-296X doi: 10.52825/cordi.v1i.352

Various talks, works and publications

[6-LCR23]

Recording provenance of workflow runs with RO-Crate

preprint - arXiv - december 2023

[6-GBS23]

WorkflowHub – a fair registry for workflows

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Marco Enrico Piras, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens

Poster - ELIXIR All Hands 2023 - june 2023

[6-LRF23]

Making workflow provenance FAIR across workflow systems with Workflow Run RO-Crate

Simone Leo, Laura Rodriguez Navas, Jose Maria Fernandez, Paul De Geest, Luca Pireddu, Michael R Crusoe, Daniel Garijo, Iacopo Colonnelli, Raül Sirvent, Stian Soiland-Reyes

Poster - ELIXIR All Hands 2023 - june 2023

[6-SLC23]

Sharing data as machine-actionable objects using RO-Crate, Bioschemas and Signposting

Stian Soiland-Reyes, Simone Leo, Leyla Jael Castro, Peter Sefton, Carole Goble

Poster - ELIXIR All Hands 2023 - june 2023

Publications en 2022

Peer-reviewed publications in International Journals

[2-SSC22]

Packaging research artefacts with RO-Crate

Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, Jose Maria Fernandez, Daniel Garijo, Bjorn Gruning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble

Data Science IOS Press pages 97-138 vol. 5 num. 2 - july 2022 doi: 10.3233/DS-210053

Various talks, works and publications

[2-SSC22]

Creating lightweight FAIR Digital Objects with RO-Crate

Stian Soiland-Reyes, Peter Sefton, Leyla Jael Castro, Frederik Coppens, Daniel Garijo, Simone Leo, Marc Portier, Paul Groth

Research Ideas and Outcomes Pensoft Publishers pages e93937 vol. 8 - 2022 doi: 10.3897/rio.8.e93937

[2-DCS22]

Enhancing RDM in Galaxy by integrating RO-Crate

Paul De Geest, Frederik Coppens, Stian Soiland-Reyes, Ignacio Eguinoa, Simone Leo

Research Ideas and Outcomes Pensoft Publishers pages e95164 vol. 8 - 2022 doi: 10.3897/rio.8.e95164

[6-GBS22]

The WorkflowHub: A FAIR Registry for Workflows

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Salvador Capella-Gutierrez, Michael R Crusoe, Bjorn Gruning, Simone Leo, Luca Pireddu, Johan Gustafson, Phil Ewels, WorkflowHub Community, Frederik Coppens

Poster - ELIXIR All Hands 2022 - june 2022

Publications en 2021

Peer-reviewed publications in international events

[4-WHM21]

ISO 23494: Biotechnology -- Provenance Information Model for Biological Specimen And Data

Rudolf Wittner, Petr Holub, Heimo Müeller, Carole Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio, David Grunwald, Hiroki Nakae

Provenance and Annotation of Data and Processes Springer International Publishing pages 222--225 Cham - 2021
isbn: 978-3-030-80960-7 doi: 10.1007/978-3-030-80960-7_16

Various talks, works and publications

[6-SSC21]

Packaging research artefacts with RO-Crate

Article - arXiv - august 2021

[6-GBS21]

The WorkflowHub: A FAIR Registry for Workflows and Workflow Research Objects

Poster - BOSC 2021 - july 2021

Publications en 2020

Various talks, works and publications

[6-GBS20]

The WorkflowHub: A FAIR registry for Workflows and Workflow Research Objects

Carole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Flora DAnna, Herve Menager, Laura Rodriguez Navas, Jose Maria Fernandez, Ivan Topolsky, Alban Gaignard, Bjoern Gruening, Simone Leo, Luca Pireddu, Phil Ewels, Maciek Bak, Salvador Capella-Gutierrez, Michael R Crusoe, Frederik Coppens

Poster - International FAIR Convergence Symposium 2020 - november 2020

[6-WHG20]

ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen and Data

Rudolf Wittner, Petr Holub, Jörg Geiger, Carole Goble, Heimo Müeller, Stian Soiland-Reyes, Elliot Fairweather, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Gianluigi Zanetti, Caterina Strambio, Josh Moore, David Grunwald, Jason R. Swedlow

Poster - ProvenanceWeek 2020 - june 2020

19 publications Download the selection