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Publications de Zanetti au CRS4

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Publications en 2015

Peer-reviewed publications in national events

[5-CBZ15]

Spectral coherence analysis in EEG nocturnal epilepsy recordings

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Ricerca traslazionale e nuove Frontiere della terapia nella Medicina del Sonno AIMS - 2015

Various talks, works and publications

[6-CUO15]

Exploiting a large scale biodata management system to support NGS variant detection studies

Gianmauro Cuccuru, Paolo Uva, Stefano Onano, Rossano Atzeni, Simone Leo, Luca Lianas, Manuela Oppo, Luca Pireddu, Andrea Angius, Laura Crisponi, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at ISMB/ECCB, 10-14 July 2015, Dublin - 2015

[2-BCZ15]

Quality assessment for different haplotyping methods and GWAS sensitivity to phasing errors

Giovanni Busonera, Marco Cogoni, Gianluigi Zanetti

bioRxiv Cold Spring Harbor Labs Journals pages 015669 - 2015

[2-BCZ15]

Transition to congestion in communication/computation networks via Montecarlo simulations: from optimal resource allocation to real-world routing algorithms

Giovanni Busonera, Marco Cogoni, Gianluigi Zanetti

Arxiv Cornell University Library - 2015

[6-CLL15]

Combining enabling technologies to build the largest NGS core facility in Italy

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Massimiliano Orsini, Luca Pireddu, Andrea Sbardellati, Rossano Atzeni, Roberto Cusano, Manuela Oppo, Paolo Uva, Andrea Angius, Gianluigi Zanetti, Giorgio Fotia

Invited presentation to Biodata World Congress 2015, Hinxton, Cambridge, UK - 21-22 October - 2015 - 2015

[6-CAF15]

A Galaxy based infrastructure

Gianmauro Cuccuru, Rossano Atzeni, Giorgio Fotia, Paolo Uva, Gianluigi Zanetti

Oral presentation at ELIXIR All hands meeting - Hinxton - march 2015

Publications en 2014

Peer-reviewed publications in International Journals

[2-COP14]

Orione, a web-based framework for NGS analysis in microbiology

Gianmauro Cuccuru, Massimiliano Orsini, Andrea Pinna, Andrea Sbardellati, Nicola Soranzo, Antonella Travaglione, Paolo Uva, Gianluigi Zanetti, Giorgio Fotia

Bioinformatics Oxford University Press pages 1928-1929 vol. 30 num. 13 - 2014 doi: 10.1093/bioinformatics/btu135

[2-LPC14]

BioBlend.objects: metacomputing with Galaxy

Simone Leo, Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Nicola Soranzo, Enis Afgan, Gianluigi Zanetti

Bioinformatics Oxford University Press pages 2816-2817 vol. 30 num. 19 - 2014 doi: 10.1093/bioinformatics/btu386

[2-CBA14]

Critical phenomena in communication/computation networks with different topologies and optimal resources allocation

Marco Cogoni, Giovanni Busonera, Paolo Anedda, Gianluigi Zanetti

Journal of Physics: Conference Series (JPCS) IOP - 2014

[2-CLB14]

VISPA: a computational pipeline for the identification and analysis of genomic vector integration sites

Andrea Calabria, Simone Leo, Fabrizio Benedicenti, Daniela Cesana, Giulio Spinozzi, Massimiliano Orsini, Stefania Merella, Elia Stupka, Gianluigi Zanetti, Eugenio Montini

Genome Medicine BioMed Central vol. 6 num. 9 - september 2014 doi: 10.1186/s13073-014-0067-5

Peer-reviewed publications in international events

[4-PLS14]

A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy

Luca Pireddu, Simone Leo, Nicola Soranzo, Gianluigi Zanetti

Proc. of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics ACM BCB '14 pages 184--191 New York, NY, USA - 2014
isbn: 978-1-4503-2894-4 doi: 10.1145/2649387.2649429

[4-ZNB14]

Third level remote consulting to support FAST echography in pediatric emergency assistance by the use of COTS technology (Commercial Off The Shelf)

Floriana Zennaro, Federico Nappi, Egidio Barbi, Elena Neri, Stefania Norbedo, Pierpaolo Guastalla, Daniele Grosso, Francesca Frexia, Francesco Cabras, Gianluigi Zanetti, Riccardo Triunfo

IMIT 2014 - NTERNATIONAL Medical Informatics and Telemedicine - 2014

[4-LFD14]

pyEHR: A scalable clinical data management toolkit for biomedical research projects

Luca Lianas, Francesca Frexia, Giovanni Delussu, Paolo Anedda, Gianluigi Zanetti

e-Health Networking, Applications and Services (Healthcom), 2014 IEEE 16th International Conference on E-health Networking, Application & Services IEEE pages 370-374 - october 2014 doi: 10.1109/HealthCom.2014.7001871

[4-CLL14]

An Automated Infrastructure to Support High-throughput Bioinformatics

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Michele Muggiri, Andrea Pinna, Luca Pireddu, Paolo Uva, Andrea Angius, Giorgio Fotia, Gianluigi Zanetti

Proc. IEEE International Conference on High Performance Computing & Simulation (HPCS 2014) IEEE pages 600-607 Smari, Waleed W. and Zeljkovic, Vesna Eds. - july 2014
isbn: 978-1-4799-5313-4 doi: 10.1109/HPCSim.2014.6903742

[4-FTC14]

Preliminary Cost-Benefit Analysis of a Real-Time Telemedicine System

Francesca Frexia, Riccardo Triunfo, Francesco Cabras, Cecilia Mascia, Gianluigi Zanetti, Sabrina Montis, Roberto Tumbarello

eTELEMED 2014, The Sixth International Conference on eHealth, Telemedicine, and Social Medicine IARIA eTELEMED 2014, The Sixth International Conference on eHealth, Telemedicine, and Social Medicine pages 257--262 IARIA IARIA - march 2014
issn: 2308-4359
isbn: 978-1-61208-327-8

Publications en 2013

Peer-reviewed publications in International Journals

[2-SPK13]

Scripting for large-scale sequencing based on Hadoop

André Schumacher, Luca Pireddu, Aleksi Kallio, Matti Niemenmaa, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko

EMBnet.journal pages 84--85 vol. 19 - 2013
issn: 2226-6089 doi: 10.14806/ej.19.A.628

[2-SPN13]

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

André Schumacher, Luca Pireddu, Matti Niemenmaa, Aleksi Kallio, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko

Bioinformatics Oxford University Press - october 2013 doi: 10.1093/bioinformatics/btt601

[2-BML13]

Lentiviral Hematopoietic Stem Cell Gene Therapy Benefits Metachromatic Leukodystrophy

Alessandra Biffi, Eugenio Montini, Laura Lorioli, Martina Cesani, Francesca Fumagalli, Tiziana Plati, Cristina Baldoli, Sabata Martino, Andrea Calabria, Sabrina Canale, Fabrizio Benedicenti, Giuliana Vallanti, Luca Biasco, Simone Leo, Nabil Kabbara, Gianluigi Zanetti, William B. Rizzo, Nalini A. L. Mehta, Maria Pia Cicalese, Miriam Casiraghi, Jaap J. Boelens, Ubaldo Del Carro, David J. Dow, Manfred Schmidt, Andrea Assanelli, Victor Neduva, Clelia Di Serio, Elia Stupka, Jason Gardner, Christof von Kalle, Claudio Bordignon, Fabio Ciceri, Attilio Rovelli, Maria Grazia Roncarolo, Alessandro Aiuti, Maria Sessa, Luigi Naldini

Science AAAS pages 1233158 vol. 341 num. 6148 - august 2013 doi: 10.1126/science.1233158

[2-PCL13]

Automated and traceable processing for large-scale high-throughput sequencing facilities

Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Matteo Vocale, Giorgio Fotia, Gianluigi Zanetti

EMBnet.journal pages 23--24 vol. 19 Supplement A - june 2013
issn: 2226-6089 doi: 10.14806/ej.19.A.626

Peer-reviewed publications in international events

[4-CFM13]

Reproducible and automated processing in high-throughput NGS facilities

Gianmauro Cuccuru, Giorgio Fotia, Josh Moore, Luca Lianas, Luca Pireddu, Jason R. Swedlow, Gianluigi Zanetti

Contributed presentation at the Galaxy Community Conference 2013, Oslo,Norway - 30 June, 2 July - 201 - 2013

Afficher toute la liste (199 publications) Download the selection

1 .. 3 4 5 .. 10