Publications CRS4 - Equipe SCA

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Publications en 2015

Peer-reviewed publications in national events

[5-CBZ15]

Graph-theoretic analysis of nocturnal EEG recordings for NFLE patients and controls

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Ricerca traslazionale e nuove Frontiere della terapia nella Medicina del Sonno AIMS - 2015

[5-CBZ15]

Spectral coherence analysis in EEG nocturnal epilepsy recordings

Marco Cogoni, Giovanni Busonera, Gianluigi Zanetti

Ricerca traslazionale e nuove Frontiere della terapia nella Medicina del Sonno AIMS - 2015

Various talks, works and publications

[6-CUO15]

Exploiting a large scale biodata management system to support NGS variant detection studies

Gianmauro Cuccuru, Paolo Uva, Stefano Onano, Rossano Atzeni, Simone Leo, Luca Lianas, Manuela Oppo, Luca Pireddu, Andrea Angius, Laura Crisponi, Gianluigi Zanetti, Giorgio Fotia

Poster presentation at ISMB/ECCB, 10-14 July 2015, Dublin - 2015

[6-CLL15]

Combining enabling technologies to build the largest NGS core facility in Italy

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Massimiliano Orsini, Luca Pireddu, Andrea Sbardellati, Rossano Atzeni, Roberto Cusano, Manuela Oppo, Paolo Uva, Andrea Angius, Gianluigi Zanetti, Giorgio Fotia

Invited presentation to Biodata World Congress 2015, Hinxton, Cambridge, UK - 21-22 October - 2015 - 2015

[2-BCZ15]

Quality assessment for different haplotyping methods and GWAS sensitivity to phasing errors

Giovanni Busonera, Marco Cogoni, Gianluigi Zanetti

bioRxiv Cold Spring Harbor Labs Journals pages 015669 - 2015

[2-BCZ15]

Transition to congestion in communication/computation networks via Montecarlo simulations: from optimal resource allocation to real-world routing algorithms

Giovanni Busonera, Marco Cogoni, Gianluigi Zanetti

Arxiv Cornell University Library - 2015

Contractual reports

[7-BC15]

Infrastruttura software scalabile per l’analisi di log di processi industriali complessi. Caso di studio 1: log automazione

Giovanni Busonera, Marco Cogoni

CRS4 - 2015

Publications en 2014

Peer-reviewed publications in International Journals

[2-LPC14]

BioBlend.objects: metacomputing with Galaxy

Simone Leo, Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Nicola Soranzo, Enis Afgan, Gianluigi Zanetti

Bioinformatics Oxford University Press pages 2816-2817 vol. 30 num. 19 - 2014 doi: 10.1093/bioinformatics/btu386

[2-COP14]

Orione, a web-based framework for NGS analysis in microbiology

Gianmauro Cuccuru, Massimiliano Orsini, Andrea Pinna, Andrea Sbardellati, Nicola Soranzo, Antonella Travaglione, Paolo Uva, Gianluigi Zanetti, Giorgio Fotia

Bioinformatics Oxford University Press pages 1928-1929 vol. 30 num. 13 - 2014 doi: 10.1093/bioinformatics/btu135

[2-CBA14]

Critical phenomena in communication/computation networks with different topologies and optimal resources allocation

Marco Cogoni, Giovanni Busonera, Paolo Anedda, Gianluigi Zanetti

Journal of Physics: Conference Series (JPCS) IOP - 2014

[2-LTM14]

The burden of comorbid psychiatric disorders in worsening the quality of life in multiple sclerosis patients

L Lorefice, G Trincas, MF Moro, G Fenu, G Coghe, Jessica Frau, A Picardi, Giovanni Busonera, MG Carta, Eleonora Cocco, Maria Giovanna Marrosu

Joint ACTRIMS-ECTRIMS Meeting (MSBoston 2014) MS Journal Online: Poster Session 1. Multiple Sclerosis (Houndmills, Basingstoke, England). SAGE pages 153 vol. 20 num. 1 - 2014 doi: 10.1177/1352458514546077

[2-CLB14]

VISPA: a computational pipeline for the identification and analysis of genomic vector integration sites

Andrea Calabria, Simone Leo, Fabrizio Benedicenti, Daniela Cesana, Giulio Spinozzi, Massimiliano Orsini, Stefania Merella, Elia Stupka, Gianluigi Zanetti, Eugenio Montini

Genome Medicine BioMed Central vol. 6 num. 9 - september 2014 doi: 10.1186/s13073-014-0067-5

Peer-reviewed publications in international events

[4-PLS14]

A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy

Luca Pireddu, Simone Leo, Nicola Soranzo, Gianluigi Zanetti

Proc. of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics ACM BCB '14 pages 184--191 New York, NY, USA - 2014
isbn: 978-1-4503-2894-4 doi: 10.1145/2649387.2649429

[4-LFD14]

pyEHR: A scalable clinical data management toolkit for biomedical research projects

Luca Lianas, Francesca Frexia, Giovanni Delussu, Paolo Anedda, Gianluigi Zanetti

e-Health Networking, Applications and Services (Healthcom), 2014 IEEE 16th International Conference on E-health Networking, Application & Services IEEE pages 370-374 - october 2014 doi: 10.1109/HealthCom.2014.7001871

[4-CLL14]

An Automated Infrastructure to Support High-throughput Bioinformatics

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Michele Muggiri, Andrea Pinna, Luca Pireddu, Paolo Uva, Andrea Angius, Giorgio Fotia, Gianluigi Zanetti

Proc. IEEE International Conference on High Performance Computing & Simulation (HPCS 2014) IEEE pages 600-607 Smari, Waleed W. and Zeljkovic, Vesna Eds. - july 2014
isbn: 978-1-4799-5313-4 doi: 10.1109/HPCSim.2014.6903742

Various talks, works and publications

[6-SF14]

IHE Laboratory Technical Framework Supplement- Labels and Containers Delivered

Alessandro Sulis, Francesca Frexia

- 2014

Contractual reports

[7-AGD14]

Progetto Pro.Sa. - Report sullo stato dell’arte e l’analisi del contesto

Paolo Anedda, Massimo Gaggero, Giovanni Delussu, Marco Enrico Piras, Mauro Del Rio

CRS4 - december 2014

[7-AGD14]

Progetto Pro.Sa. - Report sullo studio e sviluppo di nuovi modelli matematici predittivi simulativi di gestione e interazione

Paolo Anedda, Massimo Gaggero, Giovanni Delussu, Marco Enrico Piras, Mauro Del Rio

CRS4 - april 2014

Publications en 2013

Peer-reviewed publications in International Journals

[2-SPK13]

Scripting for large-scale sequencing based on Hadoop

André Schumacher, Luca Pireddu, Aleksi Kallio, Matti Niemenmaa, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko

EMBnet.journal pages 84--85 vol. 19 - 2013
issn: 2226-6089 doi: 10.14806/ej.19.A.628

[2-SPN13]

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

André Schumacher, Luca Pireddu, Matti Niemenmaa, Aleksi Kallio, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko

Bioinformatics Oxford University Press - october 2013 doi: 10.1093/bioinformatics/btt601

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