Publications de Pireddu au CRS4


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Publications en 2013
Various talks, works and publications
[6-MPL13]
Dynamic Hadoop clusters on HPC scheduling systems [Download PDF version]
Michele Muggiri, Luca Pireddu, Simone Leo, Gianluigi Zanetti
Contributed presentation to the 2013 Workshop on Middleware for HPC and Big Data Systems (part of Euro-Par 2013) - august 2013
[6-PLZ13]
An Update on the Seal Hadoop-based Sequencing Processing Toolbox [Download PDF version] [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
Contributed presentation to the 14th Bioinformatics Open Source Conference - july 2013
[2-RPM13]
ICT needs and challenges for Big Data in the Life Sciences
Babette Regierer, Luca Pireddu, Martijn Moné, Andreas Gisel
EMBnet.journal vol. 19 num. 1 - june 2013  doi: 10.14806/ej.19.1.699
[6-PIR13]
Data-intensive computing in NGS [Download PDF version]
Luca Pireddu
Contributed presentation to the Workshop on "ICT needs and challenges for Big Data in the Life Sciences" - june 2013
[6-SHP13]
Scripting for large-scale sequencing based on Hadoop [Download PDF version]
André Schumacher, Keijo Heljanko, Luca Pireddu, Gianluigi Zanetti, Aleksi Kallio, Eija Korpelainen
poster - The Next NGS Challenge Conference: Data Processing and Integration 14-16 May 2013, Valencia, Spain - may 2013
 
Publications en 2012
Peer-reviewed publications in international events
[4-LPZ12]
SNP genotype calling with MapReduce [Download PDF version]
Simone Leo, Luca Pireddu, Gianluigi Zanetti
Proceedings of the third international workshop on MapReduce and its Applications ACM MapReduce '12 pages 49--56 - 2012
isbn: 978-1-4503-1343-8  doi: 10.1145/2287016.2287026
Various talks, works and publications
[5-PIR12]
Big Data processing with Hadoop [Download PDF version]
Luca Pireddu
Collana seminari interni 2012 num. 20120418 - april 2012
 
Publications en 2011
Peer-reviewed publications in International Journals
[2-PLZ11]
SEAL: a distributed short read mapping and duplicate removal tool
Luca Pireddu, Simone Leo, Gianluigi Zanetti
Bioinformatics pages 2159--2160 vol. 27 num. 15 - 2011  doi: 10.1093/bioinformatics/btr325
Peer-reviewed publications in international events
[4-PLZ11]
MapReducing a genomic sequencing workflow [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
Proceedings of the second international workshop on MapReduce and its applications ACM pages 67--74 - 2011  doi: 10.1145/1996092.1996106
[4-PLZ11]
The Seal suite of distributed software for high-throughput sequencing [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
SEQAHEAD MC Business Meeting and Scientific Meeting pages 23 vol. 17 SEQAHEAD COST action BM1006 Brussels - november 2011  doi: 10.14806/ej.17.B.267
Various talks, works and publications
[6-PLR11]
Scaling with the flow: advantages of a MapReduce-based scalable and high-throughput sequencing workflow [Download PDF version] [Download PDF version]
Luca Pireddu, Simone Leo, Frederic Reinier, Riccardo Berutti, Rossano Atzeni, Gianluigi Zanetti
poster - International Conference on Human Genetics (ICHG) 2012, Montreal, Canada - october 2011
[6-PIR11]
Il calcolo su larga scala: dall'analisi dei dati genetici all'analisi del web [Download PDF version]
Luca Pireddu
presentation - Notte dei Ricercatori, 2011 - october 2011
[6-PLZ11]
A Distributed and High-Throughput Short Read Processing Suite [Download PDF version]
Luca Pireddu, Simone Leo, Gianluigi Zanetti
poster - HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms - july 2011
 
Publications en 2010
Peer-reviewed publications in International Journals
[2-MPF10]
Support vector machine (svm) as alternative tool to assign acute aquatic toxicity warning labels to chemicals
L Michielan, Luca Pireddu, Matteo Floris, Stefano Moro
Molecular Informatics vol. 29:1-2 - 2010  doi: 10.1002/minf.200900005
Various talks, works and publications
[6-PPP10]
L’importanza di definire il dominio di applicabilità di un QSAR per stimare l’incertezza delle predizioni.
Piergiorgio Palla, Luca Pireddu, Luca Pani, Patricia Rodriguez-Tomé
Poster - SardiniaChem 2010 - march 2010
 
Publications en 2009
Peer-reviewed publications in International Journals
[2-MFF09]
Mmsinc: a large-scale chemoinformatics database
Joel Pierre Masciocchi, Gianfranco Frau, Marco Fanton, Mattia Sturlese, Matteo Floris, Luca Pireddu, Piergiorgio Palla, Fabian Chatwin Cedrati, Patricia Rodriguez-Tomé, Stefano Moro
Nucleic Acid Research Database Issue Oxford University Press pages 284-290 num. 37 - january 2009  doi: 10.1093/nar/gkn727
Various talks, works and publications
[6-PMF09]
Fingerprint-based detection of high acute aquatic toxicity [Download PDF version]
Luca Pireddu, L Michielan, Matteo Floris, Patricia Rodriguez-Tomé, Stefano Moro
poster - n German Conference on Chemoinformatics, CIC- Workshop 2009 - november 2009
[6-MPM09]
MMsPred: a bioactivity and toxicology predictive system
Joel Pierre Masciocchi, Luca Pireddu, Ricardo Medda, Piergiorgio Palla, Matteo Floris, Luca Pani, Patricia Rodriguez-Tomé
Poster - in Predictive ADMET Workshop, Oxford University, Oxford, UK - july 2009
[6-MFF09]
MMsINC®: a large-scale chemoinformatics database system
Joel Pierre Masciocchi, Matteo Floris, Marco Fanton, Gianfranco Frau, Mattia Sturlese, Piergiorgio Palla, Fabian Chatwin Cedrati, Luca Pireddu, Ricardo Medda, Patricia Rodriguez-Tomé, Stefano Moro
Poster - Société Française de Chémoinformatique, Journées 2009, Montpellier, France - june 2009

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